Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1746
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    25   10.0 

>Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical
           protein ZC455.6a protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 310 DNYLNYWKKYLSHKIYGLIKESPLSDMYR 224
           D + N+W K LS   +G + +   +D+YR
Sbjct: 208 DRFNNFWHKILSSSTFGELFDRQYADVYR 236


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
            C49C3.4 protein.
          Length = 1566

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 143  ICPPNWRGYVILVPTLKSSSTDP*CKNNYY 54
            IC P + G    + T  + +TDP  K+N Y
Sbjct: 1094 ICDPGFSGPSCEIVTCTNQNTDPLAKDNAY 1123


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 72  SRICTTTFERRDQDNVPAPIWRANMSVKFLNFYLIKKKNQLVS 200
           SR+   TF+R   ++    +   NM +   + Y I +K Q V+
Sbjct: 801 SRVLEATFDREKSEDFEIQLDEKNMKLDLKSMYGIDEKGQKVT 843


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,837
Number of Sequences: 27780
Number of extensions: 151275
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)