Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1746
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   3.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   6.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   9.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 263 IDFVGQIFFPII 298
           ID + +IFFPI+
Sbjct: 415 IDVISRIFFPIV 426


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 263 IDFVGQIFFPII 298
           ID + +IFFPI+
Sbjct: 415 IDVISRIFFPIV 426


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 QTIDFVGQIFFPII*IIVLRF 319
           +TID + +I FP+   + L F
Sbjct: 460 KTIDVIARITFPVAYFMFLTF 480


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 QTIDFVGQIFFPII*IIVLRF 319
           +TID + +I FP+   + L F
Sbjct: 446 KTIDVIARITFPVAYFMFLTF 466


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 QTIDFVGQIFFPII*IIVLRF 319
           +TID + +I FP+   + L F
Sbjct: 480 KTIDVIARITFPVAYFMFLTF 500


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 QTIDFVGQIFFPII*IIVLRF 319
           +TID + +I FP+   + L F
Sbjct: 429 KTIDVIARITFPVAYFMFLTF 449


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 29  KLFTKIQLDSNYFYIKDLY 85
           KL   ++ + NY  ++D+Y
Sbjct: 107 KLLCNVEAEENYNLLEDIY 125


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 257 QTIDFVGQIFFPII 298
           QTID   +I FPI+
Sbjct: 360 QTIDIYSRIGFPIL 373


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 160 RNLTDIFALQIGAGTLSWSLRSKVVVQILDVKIITIKLNLRE 35
           RN     A +    TL+  LRS++     ++K+I+I  +L E
Sbjct: 156 RNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVE 197


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 166 KLRNLTDIFALQIGAGTL 113
           KLRN+T++F + +    L
Sbjct: 95  KLRNVTNMFIVSLAVADL 112


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 262 GLIKESPLSDMYR*QGHH 209
           GLIK+  L   +  Q HH
Sbjct: 131 GLIKQETLQRHHHLQNHH 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,319
Number of Sequences: 438
Number of extensions: 1977
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)