Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1743
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   173   8e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    97   5e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    77   7e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    48   3e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    46   1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    45   4e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    44   6e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    31   0.048
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.11 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.0  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   1.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   1.8  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   4.2  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.5  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    24   5.5  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    24   5.5  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    24   7.3  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    24   7.3  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    23   9.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  173 bits (420), Expect = 8e-45
 Identities = 76/81 (93%), Positives = 80/81 (98%)
 Frame = +3

Query: 96  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSK 275
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG+MVGMGQKDSYVGDEAQSK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 276 RGILTLKYPIEHGIVTNWDDM 338
           RGILTLKYPIEHGIV NWDDM
Sbjct: 62  RGILTLKYPIEHGIVNNWDDM 82


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 97.5 bits (232), Expect = 5e-22
 Identities = 42/75 (56%), Positives = 54/75 (72%)
 Frame = +3

Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGILTL 293
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H  VM    QKD +VG EAQ+ RG+L +
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71

Query: 294 KYPIEHGIVTNWDDM 338
           + PIE GI+ NW DM
Sbjct: 72  QRPIERGIIQNWSDM 86


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 77.0 bits (181), Expect = 7e-16
 Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
 Frame = +3

Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHHGVMVGMGQKDSYVGDEAQSK 275
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R       +  KD  VGDEA++ 
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61

Query: 276 RGILTLKYPIEHGIVTNWDDM 338
           R +L +KYP+E+GI+ ++++M
Sbjct: 62  RSLLQVKYPMENGIIRDFEEM 82


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 48.4 bits (110), Expect = 3e-07
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 24/99 (24%)
 Frame = +3

Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVG---------MGQK-------- 242
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G         M  K        
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66

Query: 243 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDM 338
                 D ++G++A  K     +L YPI HG + NWD M
Sbjct: 67  RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHM 105


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 46.4 bits (105), Expect = 1e-06
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +3

Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGILTL 293
           LV+DNGS   +AG+ G+  P+ VF ++V R R       + +  + VG++   + G  ++
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82

Query: 294 -KYPIEHGIVTNWDDM 338
            + P E  +++NWD M
Sbjct: 83  ARSPFERNVISNWDLM 98


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 44.8 bits (101), Expect = 4e-06
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = +3

Query: 99  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKR 278
           EE+ +LV+D GS   + G+AG+++P  + PS      ++GV   +  ++ YV DE Q   
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61

Query: 279 GI--LTLKYPIEHGIVTNWD 332
            I  + +K    +GI+ +W+
Sbjct: 62  PIPGMEVKNGKSNGIIQDWE 81


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 44.0 bits (99), Expect = 6e-06
 Identities = 27/78 (34%), Positives = 42/78 (53%)
 Frame = +3

Query: 99  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKR 278
           +EV+A+V+D GS   + GF+G+D P+ V PS  G       + G    + Y+    +S  
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61

Query: 279 GILTLKYPIEHGIVTNWD 332
           G + +K  I +G V NWD
Sbjct: 62  G-MEIKNAIRNGWVENWD 78


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 31.1 bits (67), Expect = 0.048
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 159 GDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGILTLKYP 302
           G+  PRA F  ++  P H G+++ M  KD   G+E  S +G  + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.11
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -3

Query: 256 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 95
           PT  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 259 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 143
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 201 RPRHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 305
           R   + +M+G     +Y+G  AQ KR +LT +  I
Sbjct: 159 RLSQYAIMIGAIHGFAYIGLAAQGKRALLTARVTI 193


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 296 FEGQDTSFALCLISYIRVLLSHTDHHA 216
           +EG+DT+      +Y+R++L  TD  A
Sbjct: 74  YEGEDTTRITRFANYLRIILPGTDQKA 100


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 114 LVVDNGSGMCKAGFAG 161
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +3

Query: 126 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMG-----QKDSYVGDEAQSKR 278
           N +GM         + R  F S VG  +     VG       Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 257 SYIRVLLSHTDHHAMMAGPSHDRGKHCARSIISCEAGLAHTG 132
           +Y  +LL   D + M  G  +DR    + + + C   L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 146 LAHTGAIVYYQRGNFFVAHLELVF 75
           L  TGAIV Y  G FF +   L+F
Sbjct: 56  LFRTGAIVAYILGMFFTSSFMLLF 79


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 158 CEAGLAHTGAIVYYQRGNFFVAHLELVFN 72
           C     HT  +V++Q  NF   + ELV N
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNN 257


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = -1

Query: 255 LHKSPSVPYRP----SRHDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLL 100
           LH SPS+        S   G    RSR    + H +  +RP +  S  + P   +L
Sbjct: 59  LHSSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 196 TIEGNTARGASSPAKPALHIPEPLSTT 116
           T EG  A+    P  P LHIP P  TT
Sbjct: 31  TFEG--AQPQWEPPIPGLHIPPPPGTT 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,971
Number of Sequences: 5004
Number of extensions: 28282
Number of successful extensions: 90
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)