Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1743
(339 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 179 5e-46
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 179 5e-46
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 179 5e-46
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 179 5e-46
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 179 5e-46
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 179 5e-46
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 179 5e-46
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 179 5e-46
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 177 1e-45
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 177 1e-45
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 177 1e-45
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 176 4e-45
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 172 5e-44
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 140 2e-34
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 97 3e-21
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 88 1e-18
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 76 7e-15
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 58 2e-09
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 36 0.010
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 36 0.010
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 33 0.040
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 33 0.069
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 27 2.6
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 27 2.6
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 27 2.6
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 27 2.6
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 27 2.6
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 27 2.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 7.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 7.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 7.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 7.9
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 26 7.9
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 26 7.9
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 26 7.9
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 179 bits (435), Expect = 5e-46
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 177 bits (432), Expect = 1e-45
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 177 bits (432), Expect = 1e-45
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 177 bits (432), Expect = 1e-45
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 176 bits (428), Expect = 4e-45
Identities = 78/83 (93%), Positives = 82/83 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQ 269
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 270 SKRGILTLKYPIEHGIVTNWDDM 338
SKRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 172 bits (419), Expect = 5e-44
Identities = 78/81 (96%), Positives = 80/81 (98%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSK 275
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 276 RGILTLKYPIEHGIVTNWDDM 338
RGILTLKYPIEHGIVTNWDDM
Sbjct: 62 RGILTLKYPIEHGIVTNWDDM 82
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 140 bits (339), Expect = 2e-34
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = +3
Query: 144 KAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 323
+AGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 324 NWDDM 338
NWDDM
Sbjct: 65 NWDDM 69
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 97.1 bits (231), Expect = 3e-21
Identities = 39/75 (52%), Positives = 56/75 (74%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGILTL 293
+V+DNGSG+ KAGFAG+ P+ F + VGRP++H VM G D ++G +A+S RG+ ++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 294 KYPIEHGIVTNWDDM 338
+YP+EHGIV NW DM
Sbjct: 71 EYPMEHGIVNNWSDM 85
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 88.2 bits (209), Expect = 1e-18
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 222 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 338
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 39
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 75.8 bits (178), Expect = 7e-15
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHHGVMVGMGQKDSYVGDEAQSKRGIL 287
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 288 TLKYPIEHGIVTNWDDM 338
+ YP+++GIV NWDDM
Sbjct: 69 DINYPMDNGIVRNWDDM 85
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 58.0 bits (134), Expect = 2e-09
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV------------GRPRHHGVMVGM 233
M ++ A V+DNG+G K G+AG+ P+ + PS + ++ V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 234 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDM 338
D ++GDEA S T+KYPI HGIV +WD M
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLM 96
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 105 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGI 284
+ ++ DNG K G ++PR V P+ + + +H V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 285 LTLKYPIEHGIVTNWD 332
++ PIE G V NWD
Sbjct: 58 FYVR-PIERGYVVNWD 72
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 105 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGI 284
+ ++ DNG K G ++PR V P+ + + +H V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 285 LTLKYPIEHGIVTNWD 332
++ PIE G V NWD
Sbjct: 58 FYVR-PIERGYVVNWD 72
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 197
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 32.7 bits (71), Expect = 0.069
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -3
Query: 319 TIPCSMGYLRVRIPLLLCASSPT*ESFCPIPTITP*WRGLPTIEGN-TARGASSPAKPAL 143
T+ S PL++ +SS S TITP +G+PT N S+P P
Sbjct: 451 TLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTPKS 510
Query: 142 HIPEPLSTTNAATSSS 95
+ STT A +++S
Sbjct: 511 TVTASPSTTGATSTAS 526
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 169 ASSPAKPALHIPEPLSTTNAATSS 98
+SSPA P++ P P +T++ +TSS
Sbjct: 652 SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 169 ASSPAKPALHIPEPLSTTNAATSS 98
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 169 ASSPAKPALHIPEPLSTTNAATSS 98
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 169 ASSPAKPALHIPEPLSTTNAATSS 98
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 144 KAGFAGDDAPRAVFPSIVGRPRHHG 218
KA + G D P+A F I+G + G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of
efl-1 mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 329 PVSDDSVFDGVFEGQDTSFALCLISYIRVLLSHTDHH 219
PVS DSV F +D CL+S +R+L++ D H
Sbjct: 232 PVSSDSVPSQQFSKEDL---YCLLSRVRMLVTFEDWH 265
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 205 GLPTIEGNTARGASSPAKPALHIP 134
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 205 GLPTIEGNTARGASSPAKPALHIP 134
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 205 GLPTIEGNTARGASSPAKPALHIP 134
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 205 GLPTIEGNTARGASSPAKPALHIP 134
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 265 ASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 98
A S T + P PT P G PT A+SP + +P+S++ ++TSS
Sbjct: 236 APSSTASTSTPAPTNLPTTTGAPTNSTTNPPTATSPKTSS----QPVSSSTSSTSS 287
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 114 LVVDNGSGMCKAGF-AGDDAPRAVFPSIVGRPRHHGV 221
LV DNG+GM KAG GD + S+ G R H V
Sbjct: 1027 LVADNGAGM-KAGVCVGDRIVQVGTESMEGHDRLHAV 1062
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 114 LVVDNGSGMCKAGF-AGDDAPRAVFPSIVGRPRHHGV 221
LV DNG+GM KAG GD + S+ G R H V
Sbjct: 986 LVADNGAGM-KAGVCVGDRIVQVGTESMEGHDRLHAV 1021
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,221,779
Number of Sequences: 27780
Number of extensions: 170715
Number of successful extensions: 539
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -