Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1742
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   3.1  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   5.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   5.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   9.4  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -2

Query: 441 LRLGNARVFPV----KDVVKPRPSEIVTTDFTIGRIGYRAPPRVLAR 313
           + L N+ + PV    K+ +KP P ++   D +  ++G    PR++++
Sbjct: 146 MTLDNSEIKPVLNQRKNYLKPDPYQLPEMDVSFDKLGSSYDPRIMSQ 192


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 138 LKNAFTPTVIGCPANMAS--PLPLQLTNSLCYVYSLG 242
           L+N F    +   AN     P P  +T+ +C VY+LG
Sbjct: 25  LQNRFVQHYLNYKANKVEQPPKPTIITSQVCPVYTLG 61


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 206 LKWQWAGHISRTTDNRWGKRVLEWR 132
           +K +W   I +    ++GKR  EW+
Sbjct: 696 IKLRWENRIDQMFTKKFGKRASEWK 720


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 346 NSPYSEVRSYNFTG 387
           N  YSE RSY FTG
Sbjct: 574 NHAYSEGRSYTFTG 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,205
Number of Sequences: 5004
Number of extensions: 33447
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)