Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1742
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743...    27   5.3  
07_03_1224 + 24991884-24992588                                         27   9.2  

>11_02_0020 +
           7429898-7430131,7432565-7432669,7434535-7434621,
           7435188-7435241,7435338-7435483,7435593-7435719,
           7436200-7436208
          Length = 253

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -2

Query: 447 RRLRLGNARVFPVKDVVKPRPSEIVTTDFTIGRIGY 340
           RRLR G A  F +KD +  RP+E +   FTI   GY
Sbjct: 65  RRLRFGAAINFVLKDKMMLRPAERLVA-FTILHQGY 99


>07_03_1224 + 24991884-24992588
          Length = 234

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 432 GNARVFPVKDVVKPRPSEIVTTDFTIGRIGYRAP 331
           G+ +V   K  V+P   E++  DF +G     AP
Sbjct: 196 GDGKVQEAKAAVRPLLDEVLVLDFVVGPAAVEAP 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,963,333
Number of Sequences: 37544
Number of extensions: 252715
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)