Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1742
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 54 5e-08
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 49 1e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 48 2e-06
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 48 2e-06
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 48 2e-06
U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.13
U40412-4|AAV28342.1| 618|Caenorhabditis elegans Hypothetical pr... 30 0.89
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 27 8.3
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = -3
Query: 260 EGIRQRTQAIDITQRIS*LKWQWAGHISRTTDNRWGKRVLEWRPRTGKRSAGRPQAR*NN 81
E +R++++ D I K WAGH++R TD RW + +W PR KR GRP R N+
Sbjct: 103 EEVREKSKLRDPLIHIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWND 162
Query: 80 DL 75
L
Sbjct: 163 SL 164
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 49.2 bits (112), Expect = 1e-06
Identities = 24/62 (38%), Positives = 31/62 (50%)
Frame = -3
Query: 260 EGIRQRTQAIDITQRIS*LKWQWAGHISRTTDNRWGKRVLEWRPRTGKRSAGRPQAR*NN 81
E IR+ + D + K WAGH++R D RW + EWRP KR GRP R +
Sbjct: 318 EDIRKMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 377
Query: 80 DL 75
L
Sbjct: 378 SL 379
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -3
Query: 260 EGIRQRTQAIDITQRIS*LKWQWAGHISRTTDNRWGKRVLEWRPRTGKRSAGRPQAR*NN 81
E IR + D + K WAGH++R D RW + EWRP KR GRP R +
Sbjct: 792 EDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 851
Query: 80 DL 75
L
Sbjct: 852 SL 853
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -3
Query: 260 EGIRQRTQAIDITQRIS*LKWQWAGHISRTTDNRWGKRVLEWRPRTGKRSAGRPQAR*NN 81
E IR + D + K WAGH++R D RW + EWRP KR GRP R +
Sbjct: 967 EDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 1026
Query: 80 DL 75
L
Sbjct: 1027 SL 1028
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -3
Query: 260 EGIRQRTQAIDITQRIS*LKWQWAGHISRTTDNRWGKRVLEWRPRTGKRSAGRPQAR*NN 81
E IR + D + K WAGH++R D RW + EWRP KR GRP R +
Sbjct: 706 EDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 765
Query: 80 DL 75
L
Sbjct: 766 SL 767
>U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical
protein W09C3.8 protein.
Length = 312
Score = 32.7 bits (71), Expect = 0.13
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -3
Query: 197 QWAGHISRTTDNRWGKRVLEWRP---RTGKRSAGRPQAR*NNDL 75
++AGHI R NRW K EW P + KR+ G + R D+
Sbjct: 215 RFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258
>U40412-4|AAV28342.1| 618|Caenorhabditis elegans Hypothetical
protein F46G11.1 protein.
Length = 618
Score = 29.9 bits (64), Expect = 0.89
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 100 GRPALRFP-VRGLHSRTRLPQRLSVVRLI 183
G+PA+ FP RG+ SR R+P L ++R +
Sbjct: 110 GQPAILFPRYRGMTSRLRIPMGLKLIRKV 138
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
F09E8.3 protein.
Length = 1369
Score = 26.6 bits (56), Expect = 8.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 346 NSPYSEVRSYNFTGPGFYNVFDWENPGV 429
++P+ +RS N P F+N+F++ + +
Sbjct: 1125 DTPHETIRSSNEVNPEFFNIFNFPDDSI 1152
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 26.6 bits (56), Expect = 8.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 346 NSPYSEVRSYNFTGPGFYNVFDWENPGV 429
++P+ +RS N P F+N+F++ + +
Sbjct: 1125 DTPHETIRSSNEVNPEFFNIFNFPDDSI 1152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,401,835
Number of Sequences: 27780
Number of extensions: 198296
Number of successful extensions: 449
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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