Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1741
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0464 + 34126930-34127065,34127149-34127333,34127444-341276...    31   0.83 
04_04_1227 - 31882500-31882778,31883039-31883329,31883555-318838...    30   1.9  
06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,519...    29   2.5  
12_02_1189 - 26804775-26804930,26805020-26805123,26805346-268056...    29   3.3  
04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061     29   3.3  
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493...    28   5.9  
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849...    28   7.7  

>03_06_0464 +
           34126930-34127065,34127149-34127333,34127444-34127632,
           34128309-34128471,34129046-34129232,34129467-34129611
          Length = 334

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 469 GKAVLVTGCDNVLSNALARRLDDMGYHVFAGLSN 570
           G+ VLVTG    + + L RRL   GY V A + N
Sbjct: 11  GETVLVTGASGFIGSCLVRRLLARGYSVHAAVLN 44


>04_04_1227 -
           31882500-31882778,31883039-31883329,31883555-31883800,
           31884212-31884353,31884583-31884653
          Length = 342

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = -3

Query: 194 ARRVTSPATMIPTYCSEHDNAPDNLT*MFSTKLSSGSERRTVFRVAPC 51
           +RR   PA      CS HD  P N   + STKL S      VF   PC
Sbjct: 23  SRRKCRPAGRNNFRCSLHDKVPLNAHGVLSTKLLSCLAASLVFISPPC 70


>06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,
            5195691-5195845,5196547-5196557,5197632-5197689,
            5197855-5198004,5198074-5198169,5198398-5198818,
            5198835-5198950,5199041-5199149,5199483-5199532,
            5200936-5201004,5201366-5201459,5201550-5201820,
            5202273-5202607,5202718-5202786,5202834-5202904
          Length = 977

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -3

Query: 644  VVRVCILPRAIFLLSISASNCCPL*FESPANT*YPISSSLRASALLNTLSHPVTST 477
            ++RV       F LS  A+ CC   +E  A   Y  S  L A   +    H +TST
Sbjct: 833  ILRVPFRIHLSFFLSFFAAGCCKRNYEGNAGQIYHFSCQLTADHAMTHRLHIMTST 888


>12_02_1189 -
           26804775-26804930,26805020-26805123,26805346-26805610,
           26805697-26805795,26806284-26806425,26806516-26806621,
           26806718-26806785,26806870-26806929,26807292-26807566,
           26807671-26807748,26808137-26808391,26809167-26809199,
           26809312-26809444,26810060-26810202,26810249-26810327,
           26810434-26810533,26811278-26811521,26811620-26811735,
           26811845-26812004,26812347-26812574
          Length = 947

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 572 KAGNNSMQICLKEKWLLEEYIPLQLDITV*NP 667
           KA +N    CL+ +W LE Y+  Q DI   +P
Sbjct: 254 KADDNLGPTCLRSRWQLEAYLNQQADILEKDP 285


>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
          Length = 346

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 325 CHALAVVLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLV-TGCDN 501
           C   AVV++T+   L ++  +V TLFL      TG        +   AG AVLV      
Sbjct: 172 CVTYAVVVATLQLFLRLTGANVTTLFLPMLSQATGC------GKAALAGHAVLVLANAGG 225

Query: 502 VLSNALARR 528
           VL +ALA R
Sbjct: 226 VLGSALAAR 234


>06_03_0056 -
           16046535-16047309,16047625-16048784,16049233-16049340,
           16049487-16049672,16050342-16050398
          Length = 761

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = +1

Query: 94  LSFVENIYVRLSGALSCSEQ*VGIMVAGDVTRRASITAPSMHRRPSARRGSLIKGPSNPS 273
           L+F+ N   R+      + + V   +  ++   A      + ++PS R+  L+     PS
Sbjct: 497 LAFLRNSRTRIPSISEDAVRLVASFLDSELKTEALEILHELLQQPSCRKSRLMASVVAPS 556

Query: 274 QEVPWDIIDRCALPIVL 324
             + WD  D   L +VL
Sbjct: 557 VFLAWDSADSLCLELVL 573


>08_02_1249 -
           25584175-25584325,25584520-25584625,25584801-25584963,
           25585047-25585241,25585286-25585548,25585654-25585774
          Length = 332

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 451 LQVTAAGKAVLVTGCDNVLSNALARRLDDMGYHV 552
           ++ T  GK V VTG    +++ L +RL + GYHV
Sbjct: 1   MENTTKGK-VCVTGASGYVASWLVKRLLESGYHV 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,096,717
Number of Sequences: 37544
Number of extensions: 453373
Number of successful extensions: 1131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)