Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1741
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenase... 38 0.009
AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenase... 38 0.009
AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenase... 38 0.009
AF022968-6|AAB69884.1| 388|Caenorhabditis elegans Dehydrogenase... 36 0.020
Z74032-1|CAA98465.3| 342|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical pr... 31 0.98
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ... 29 3.9
AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical ... 29 3.9
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 28 5.2
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 28 5.2
Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical pr... 28 6.9
>AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform b protein.
Length = 247
Score = 37.5 bits (83), Expect = 0.009
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGK-AVLVTGCDNVLSNAL 519
+L ILN + SVF L + F + + G F LQ+ K AV +TGCD+ L
Sbjct: 4 ILYWILNLTVVE--SVFYLVVAFLLFLIGR-HFIEKLQINNLSKRAVFITGCDSGFGRGL 60
Query: 520 ARRLDDMGYHVFAGLSN*SGQQFDADMLKRKMALGR 627
A + + G VFAG G + + ++ + GR
Sbjct: 61 ALKCLEQGMPVFAGCLTEQGIESLSAEARKSIGNGR 96
>AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform c protein.
Length = 343
Score = 37.5 bits (83), Expect = 0.009
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGK-AVLVTGCDNVLSNAL 519
+L ILN + SVF L + F + + G F LQ+ K AV +TGCD+ L
Sbjct: 4 ILYWILNLTVVE--SVFYLVVAFLLFLIGR-HFIEKLQINNLSKRAVFITGCDSGFGRGL 60
Query: 520 ARRLDDMGYHVFAGLSN*SGQQFDADMLKRKMALGR 627
A + + G VFAG G + + ++ + GR
Sbjct: 61 ALKCLEQGMPVFAGCLTEQGIESLSAEARKSIGNGR 96
>AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform a protein.
Length = 368
Score = 37.5 bits (83), Expect = 0.009
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGK-AVLVTGCDNVLSNAL 519
+L ILN + SVF L + F + + G F LQ+ K AV +TGCD+ L
Sbjct: 29 ILYWILNLTVVE--SVFYLVVAFLLFLIGR-HFIEKLQINNLSKRAVFITGCDSGFGRGL 85
Query: 520 ARRLDDMGYHVFAGLSN*SGQQFDADMLKRKMALGR 627
A + + G VFAG G + + ++ + GR
Sbjct: 86 ALKCLEQGMPVFAGCLTEQGIESLSAEARKSIGNGR 121
>AF022968-6|AAB69884.1| 388|Caenorhabditis elegans Dehydrogenases,
short chain protein16 protein.
Length = 388
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 448 NLQVTAAGKAVLVTGCDNVLSNALARRLDDMGYHVFAGLSN*SGQ-QFDADMLKRKMALG 624
N V ++GK V++TGCD+ LA L D +VFA G ++ +K G
Sbjct: 25 NFYVESSGKYVMITGCDSGFGRLLATSLLDKHVNVFAACFTQQGMASLHSEWKLKKGPKG 84
Query: 625 RIHTL 639
+++TL
Sbjct: 85 QLYTL 89
>Z74032-1|CAA98465.3| 342|Caenorhabditis elegans Hypothetical
protein F35B12.2 protein.
Length = 342
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +1
Query: 385 SVFTLFLWF-AISVTGSLWFYHNLQVTAAG----KAVLVTGCDNVLSNALARRLDDMGYH 549
++FT L+F A+ V ++ Y + G +A+L+TGCD LA++ G+
Sbjct: 8 TLFTWVLYFVAVVVVWNIVRYILELIPEGGSLQDRAILITGCDTGFGRELAKKCAKNGFL 67
Query: 550 VFAG 561
VFAG
Sbjct: 68 VFAG 71
>Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical
protein F56G4.1 protein.
Length = 975
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 355 ILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLVTGCDNVLSNALARRLD 534
+ S ++ SV LFL + GS+W + +TAAG + +L + L
Sbjct: 215 VFESNDVANCSVAVLFLCLLPTHLGSMWLRPLVTLTAAGLIFMENKSCQILQSPTLTYLG 274
Query: 535 DMGYHVF 555
D+ Y V+
Sbjct: 275 DISYVVY 281
>Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical
protein F56G4.1 protein.
Length = 975
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 355 ILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLVTGCDNVLSNALARRLD 534
+ S ++ SV LFL + GS+W + +TAAG + +L + L
Sbjct: 215 VFESNDVANCSVAVLFLCLLPTHLGSMWLRPLVTLTAAGLIFMENKSCQILQSPTLTYLG 274
Query: 535 DMGYHVF 555
D+ Y V+
Sbjct: 275 DISYVVY 281
>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
protein C26G2.1 protein.
Length = 1270
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +1
Query: 259 PSNPSQEVPWDIIDRCALPIVLCHALAV---VLSTILNSLHISQVSVFTLFL---WFAIS 420
PSNP+ ++ W II+ ++P V ++S+ S+H +++SV + A +
Sbjct: 356 PSNPASQITW-IINGRSVPTPTQREFVVENGIVSSSNVSVHSNELSVEAHQINVECMATN 414
Query: 421 VTGSLWFYHNLQVTAAGKAVLVTGCDN 501
GS H +++ A KA ++TG ++
Sbjct: 415 PEGSSAKQHVIKIIAPPKAPIITGLED 441
>AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical
protein F54E2.5 protein.
Length = 710
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 343 VLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLVTGCDNVLSNALA 522
VLST++ +L + +V + LW WF L + +V + C N+L N A
Sbjct: 411 VLSTVITTLLTTVFTVLIMLLWGYFKPMKFFWFLAQLTI-----SVFIISCANLLINVPA 465
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 517 VRCLIHCHTQ*QVLLCRQPLPVNYGRTTRIQLRKLQTIK 401
VR +IH V P PVNY T++ L++ + +K
Sbjct: 121 VRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFKLVK 159
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 517 VRCLIHCHTQ*QVLLCRQPLPVNYGRTTRIQLRKLQTIK 401
VR +IH V P PVNY T++ L++ + +K
Sbjct: 113 VRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFKLVK 151
>Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical
protein W01C9.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 190 RASITAPSMHRRPSARRGSLIKGPSNPS 273
R + T PS+ P +R GS+I GP NPS
Sbjct: 124 RPAGTIPSLGSMPPSRSGSIITGP-NPS 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,600
Number of Sequences: 27780
Number of extensions: 369323
Number of successful extensions: 840
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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