Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1739
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    28   1.5  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   7.9  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   7.9  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    25   7.9  

>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 203 YITHISTRISRWMMVFTLFVSMGFGNHLAVGD 108
           Y+    T+ S W+  FT FVS  +GN + V D
Sbjct: 10  YLNKKETKHSDWVEPFTTFVSRIYGNSVDVED 41


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 408 HKYRPFYIPTLVLCGFFLLKFCCKNTARSVVYWYSTSNAN 289
           HK+R  Y P + L     L FC      ++  WY+ S  N
Sbjct: 384 HKFRNLYSPNIFLSIVQALVFC--GDMVNIQRWYNMSRVN 421


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 496 YRNSYNHVNSSRNALNVFIVCFSMFVL*NT*VSALLYTYACIMRLFSIEVLL 341
           YR+    V +S N L  F+V F    + N+    L Y YACI    + ++ L
Sbjct: 399 YRSKCAAVATSGNWLGNFMVSFFTPFISNSIGFKLGYIYACINMTSAFQIFL 450


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 161 PSSTLRYASKCEL-YKRGITAVPTFEPN 241
           PS + + +  CEL YK   T VP+ EPN
Sbjct: 45  PSDSGKTSLFCELIYKEKKTTVPSIEPN 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,239
Number of Sequences: 5004
Number of extensions: 58911
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)