Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1739
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z80223-5|CAB02321.1|  153|Caenorhabditis elegans Hypothetical pr...    29   3.2  

>Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical
           protein C31G12.1 protein.
          Length = 199

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
 Frame = -2

Query: 381 TLVLCGFFLL----KFCCKNTARSVVY--WYSTSNANVGNVTTDCLLLPQGKRFGSKVGT 220
           +LV CGFF +    ++ C N +  V +  ++ T++  + N T   + LP+  R   +   
Sbjct: 83  SLVACGFFTIICANQYICDNHSWIVSFSTFFFTAHVRLTNATISSIELPEKTRRSHEHIK 142

Query: 219 A--VIPRLYNSHFDAYLKVDDGVHLICVYGLR*PFSGRRLRFTKLSNKKKRVNSIM 58
              ++  ++  +    L + +G HL  V+G+    +G R        +K++  + M
Sbjct: 143 LHRLLVLIFVFYIGLILAIKNGYHLTLVFGIMIVLTGVRFEMIPAEVQKEKSKAKM 198


>Z80223-5|CAB02321.1|  153|Caenorhabditis elegans Hypothetical
           protein F26D10.12 protein.
          Length = 153

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 671 LSKCFIGMAGNRIFQINTLP 612
           LS C +G+ GNRIF + T P
Sbjct: 11  LSVCLVGIFGNRIFGVKTCP 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,801,219
Number of Sequences: 27780
Number of extensions: 323390
Number of successful extensions: 699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)