Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1739
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   1.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    24   1.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.5  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   8.6  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   8.6  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 514 NFNFCEYRNSYNHVNSSRNALNV 446
           N+N+  Y N+YN      N +N+
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 514 NFNFCEYRNSYNHVNSSRNALNV 446
           N+N+  Y N+YN      N +N+
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINI 341


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 508 NFCEYRNSYNHVNSSRNALN 449
           N+  Y N+YN+ N+  N  N
Sbjct: 326 NYNNYNNNYNNYNNYNNNYN 345


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 514 NFNFCEYRNSYNHVNSS 464
           N+N   Y N+YN+ N++
Sbjct: 328 NYNNNNYNNNYNNYNNN 344


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 303 TSNANVGNVTTDCLL 259
           T   N+GN  TDC +
Sbjct: 123 TDECNIGNKYTDCYI 137


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 303 TSNANVGNVTTDCLL 259
           T   N+GN  TDC +
Sbjct: 123 TDECNIGNKYTDCYI 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,224
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)