Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1736
(373 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 1.2
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 27 1.2
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 1.6
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 3.8
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 24 6.7
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 6.7
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 24 6.7
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 6.7
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 24 6.7
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 24 8.8
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 1.2
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Frame = +2
Query: 128 NGYKKNGYVNHECTESVSLRH-----AAPFS---TDPMALAERDSCHYGRIPRAAALAGT 283
N Y +++H+C E S H P + D + CH+G+ PR GT
Sbjct: 157 NTYFDKTHIDHKCKEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGT 216
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 104 NGKLENSLNGYKKNGYVNHECTESVSLRHAAPFSTDPMALAER 232
N ++ SL+ K+ Y+ EC E+ LRH S+ + + R
Sbjct: 108 NTYIQKSLHRLKEVYYIYRECAETWQLRHLRVASSQQLPVGLR 150
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 16 IYKNFTLKKKEDFVHDVISSDASANEWTHEREAG-KFIKRIQKKW 147
IYKN+ + + D+ +D+ + W+ EA +F+ + W
Sbjct: 85 IYKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSW 129
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 287 GRKVRVYSDGIYHIVQPG 340
GR VRVY+DG++ + G
Sbjct: 91 GRPVRVYADGVFDLFHIG 108
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +2
Query: 80 PPLTNGHT-NGKLENSLNGYKKNGYVNHECTESVSLRHAAPFSTDPMAL 223
PP N NG + N Y +GY N + ++ F DP L
Sbjct: 53 PPFVNTTAPNGTCLGNYNEYLPSGYYNATDRPKIHFTPSSGFMNDPNGL 101
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 110 KLENSLNGYKKNGYVNHECTESVSLRHAAPFSTDPMALAERDSCHYGRIPRAAALAGT 283
++E++ + KNG + S + PFST ++ A S +P + L T
Sbjct: 40 EVESAYDNLVKNGMIAPRRKNSFASSVNNPFSTSALSEALNGSVSMSHVPSSGLLKST 97
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 83 PLTNGHTNGKLENSLNGYKKNGYVNHECTESVSL 184
P + H + L NSLN K + + E+VSL
Sbjct: 68 PKQSSHMSASLLNSLNTSMKKSFSRKKYREAVSL 101
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 207 RIPWRWLNGIRVTTGGY 257
++ WRWL I V GG+
Sbjct: 233 KLTWRWLYWIDVIVGGF 249
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 37 KKKEDFVHDVISSDASANEWTHEREAGKFIKRIQKKWIRKSRMHGIGF 180
+K D+ + V+ + A E + RI +W RK +GF
Sbjct: 415 RKVSDYPNMVVITPADLPEGIDTTQGSMEFDRIHNRWRRKGHDSDLGF 462
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 83 PLTNGHTNGKLENSLNGYKKN 145
P ++ TNG LE + N KKN
Sbjct: 428 PTSSSSTNGTLEPNANSPKKN 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,607
Number of Sequences: 5004
Number of extensions: 23774
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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