Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1736
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993... 28 2.0
10_08_0092 - 14752397-14752867 28 2.7
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 27 3.6
11_03_0182 + 11307275-11307368,11307485-11307594,11307654-113078... 27 4.7
11_03_0133 + 10536554-10536828,10537252-10537423 27 4.7
08_01_0407 - 3613417-3613506,3613603-3613713,3613789-3613857,361... 27 4.7
01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233 27 4.7
10_08_0188 - 15596062-15597084,15597513-15597791 27 6.2
02_02_0577 - 11736474-11736609,11736756-11737003,11738002-117380... 27 6.2
06_01_0511 + 3688788-3688880,3689050-3689166,3689959-3690066,369... 26 8.2
04_03_0653 - 18429736-18431379 26 8.2
02_05_1126 - 34284733-34284810,34285151-34285291,34285424-342855... 26 8.2
02_01_0546 + 4024793-4025025,4026259-4026372,4026482-4026577,402... 26 8.2
>01_05_0722 +
24598426-24598649,24599113-24599219,24599319-24599374,
24599469-24599675,24599757-24599963,24600037-24600123,
24600167-24600208,24600209-24600304,24600406-24600621,
24600693-24600875,24601014-24601241
Length = 550
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 250 ADTTRRGTCRHRGPQGQGLLGRDLPHCST 336
+D T R R RGP+G G+ G +P T
Sbjct: 7 SDATHRKRRRRRGPKGSGVDGPSIPRAVT 35
>10_08_0092 - 14752397-14752867
Length = 156
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 164 CTESVSLRHAAPFSTDPMALAERDSCHYGRIPRAAALAGTAGRKVRVYSDGIYHIVQPGP 343
C + + R A D + LAE+ C + L A KV + SDG+ HI P
Sbjct: 85 CAKKLCERIDASTVADNLGLAEKQHCRLLKEACLEFLKAPANLKVVLASDGLDHITATCP 144
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 299 RVYSDGIYHIVQPGPREAFATSE 367
R Y G Y +V+ PR AF T E
Sbjct: 508 RTYKPGTYRLVRSYPRRAFTTGE 530
>11_03_0182 +
11307275-11307368,11307485-11307594,11307654-11307856,
11307879-11307964,11308861-11308934,11308936-11309078,
11309485-11309594,11309645-11309787
Length = 320
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 164 IRDLRIHFFCIRLMNFPASRSCVH 93
IR+L+ F CIRL++ R C+H
Sbjct: 283 IRNLKSRF-CIRLLHLSCPRDCIH 305
>11_03_0133 + 10536554-10536828,10537252-10537423
Length = 148
Score = 27.1 bits (57), Expect = 4.7
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 187 TRGPVQYGSHGVG*TGFVSLR-ADTTRRGTCRHRGPQGQGLLGRDLPHCSTRATRG 351
+ G V+ GS GV G S R D+ G H G G+G G H R T G
Sbjct: 47 SEGAVRSGSGGVLPCGGSSARPCDSEAAGGAAHDGAAGRGPGGAACGHGMARQTAG 102
>08_01_0407 -
3613417-3613506,3613603-3613713,3613789-3613857,
3613936-3614091,3614156-3614222,3614375-3614470,
3614976-3615142
Length = 251
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 287 GRKVRVYSDGIYHIVQPGPREA 352
GR VRVY+DGIY + G A
Sbjct: 28 GRPVRVYADGIYDLFHFGHARA 49
>01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233
Length = 310
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 94 WTHEREAGKFIKRIQKKWIRKSRMHGIG--FATTRGPVQYGSH 216
WT E E KF+ ++K + K GI F TTR P Q SH
Sbjct: 126 WTEE-EHRKFLVGLEK--LGKGDWRGISRHFVTTRTPTQVASH 165
>10_08_0188 - 15596062-15597084,15597513-15597791
Length = 433
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 34 LKKKEDFVHDVISSDASANEWTHEREAGK 120
LKK+ED + IS+ A WT ++ GK
Sbjct: 176 LKKEEDDSNSAISAAGGAQVWTCKKNDGK 204
>02_02_0577 -
11736474-11736609,11736756-11737003,11738002-11738087,
11738557-11738633,11738813-11738846,11739922-11740037,
11740121-11740659
Length = 411
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 173 SVSLRHAAPFSTDPMALAERDSCHYGRIPRAAALAGTAG 289
SV+L +PF+ +P +A CH+ + P A + AG
Sbjct: 61 SVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAG 99
>06_01_0511 +
3688788-3688880,3689050-3689166,3689959-3690066,
3690634-3690825,3691010-3691201,3691484-3691602,
3691740-3691827,3692155-3692274,3692378-3692518,
3693065-3693142
Length = 415
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +1
Query: 103 EREAGKFIKRIQKKWIRKSRMHGIGFATTRGPVQYGSHGVG*TGFVSLRADTTRRGTCRH 282
E++ + ++ I K R +G +G + YG G G T A T +
Sbjct: 168 EKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 227
Query: 283 RGPQ 294
GPQ
Sbjct: 228 AGPQ 231
>04_03_0653 - 18429736-18431379
Length = 547
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 224 PTPWDPY*TGPRVVAKPIPCIRDLRIH 144
P+ WD + PRV+ + PC+ L IH
Sbjct: 386 PSNWDV--SWPRVILEAAPCLEVLHIH 410
>02_05_1126 -
34284733-34284810,34285151-34285291,34285424-34285543,
34285787-34285874,34285962-34286080,34286437-34286628,
34286802-34286993,34287309-34287416,34287983-34288099,
34288214-34288315
Length = 418
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +1
Query: 103 EREAGKFIKRIQKKWIRKSRMHGIGFATTRGPVQYGSHGVG*TGFVSLRADTTRRGTCRH 282
E++ + ++ I K R +G +G + YG G G T A T +
Sbjct: 171 EKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 230
Query: 283 RGPQ 294
GPQ
Sbjct: 231 AGPQ 234
>02_01_0546 +
4024793-4025025,4026259-4026372,4026482-4026577,
4026780-4026822,4026958-4027098,4027235-4027315,
4028032-4028130,4028225-4028350
Length = 310
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 287 GRKVRVYSDGIYHIVQPG 340
GR +RVY+DGIY + G
Sbjct: 50 GRPIRVYADGIYDLFHFG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,697,347
Number of Sequences: 37544
Number of extensions: 187540
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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