Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1736
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29378-8|ABA54423.1|  354|Caenorhabditis elegans Hypothetical pr...    45   2e-05
U29378-7|AAA68722.2|  362|Caenorhabditis elegans Hypothetical pr...    45   2e-05
AC024751-2|AAN39663.1|  272|Caenorhabditis elegans Hypothetical ...    43   8e-05
AC006632-3|AAK85467.1|  183|Caenorhabditis elegans Hypothetical ...    35   0.021
Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical pr...    31   0.20 
AL034393-2|CAA22309.1|  220|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    27   5.7  
U29377-4|AAA68712.1|  412|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome re...    26   7.5  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    26   7.5  
Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    26   9.9  
AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    26   9.9  

>U29378-8|ABA54423.1|  354|Caenorhabditis elegans Hypothetical
           protein F08C6.2b protein.
          Length = 354

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 173 SVSLRHAAPFSTDPMALAERDSCHYGR-IPRAAALAGTAGRKVRVYSDGIYHIVQPG 340
           S++    APFS + +A+  R++  Y + I  A A A  AGR VR+Y+DGIY +   G
Sbjct: 31  SLASDEPAPFSDEALAITTREAVDYSKKITLAMAEANEAGRPVRIYADGIYDLFHHG 87


>U29378-7|AAA68722.2|  362|Caenorhabditis elegans Hypothetical
           protein F08C6.2a protein.
          Length = 362

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 173 SVSLRHAAPFSTDPMALAERDSCHYGR-IPRAAALAGTAGRKVRVYSDGIYHIVQPG 340
           S++    APFS + +A+  R++  Y + I  A A A  AGR VR+Y+DGIY +   G
Sbjct: 39  SLASDEPAPFSDEALAITTREAVDYSKKITLAMAEANEAGRPVRIYADGIYDLFHHG 95


>AC024751-2|AAN39663.1|  272|Caenorhabditis elegans Hypothetical
           protein Y18H1A.11 protein.
          Length = 272

 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 164 CTESVSLRHAAPFSTDPMALAERDSCHYG-RIPRAAALAGTAGRKVRVYSDGIYHIVQPG 340
           C ++++    APFS D   + +R++  Y  +I    A++G   R VRVY+DG+Y +   G
Sbjct: 2   CDDTLAFCSPAPFSDDVEVIKQREAIDYSTQITLEDAISGNVTRPVRVYADGVYDMFHYG 61

Query: 341 PREAF 355
               F
Sbjct: 62  HANQF 66


>AC006632-3|AAK85467.1|  183|Caenorhabditis elegans Hypothetical
           protein F28A10.10 protein.
          Length = 183

 Score = 34.7 bits (76), Expect = 0.021
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 194 APFSTDPMALAERDSCHYG-RIPRAAALAGTAGRKVRVYSDGIYHIVQPG 340
           AP + D   +A+R+   Y  +I    A  G + R +RVY+DGIY +   G
Sbjct: 7   APLTDDSTVIAKRNLIDYSEKISMENARNGLSSRPIRVYADGIYDMFHYG 56


>Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical
           protein W04D2.4 protein.
          Length = 624

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 182 AKPIPCIRDLRIHFFCIRLMNFPASRSCVHSLAEASLLMTSCTK 51
           + P+  I  LR HF  I   N  A R C     E   L+ SCTK
Sbjct: 218 SSPMEIIGFLRHHFLSISADNIYAQRVCFVDTDELKTLLVSCTK 261


>AL034393-2|CAA22309.1|  220|Caenorhabditis elegans Hypothetical
           protein Y18D10A.2 protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 162 NARNRFRYDTRPRSVRIPWRWLNGIR 239
           N  N +RY+  P S  +PW  +NG R
Sbjct: 162 NDENSYRYNVAPHSAWLPWIQVNGER 187


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = -3

Query: 245 SDTNPVQPTPWDPY*TGPRVVAKPIPCIRDLRIHFFCIRLMNFPA-------SRSCVHSL 87
           ++TN +    WD   T    V   +  IR++R H   +    FP+       SR     +
Sbjct: 306 NETNIINQMEWDVNLTLTSSVHGSLGWIREIRAHIKLLLCFIFPSSFTLAAFSREKYSEI 365

Query: 86  AEASLLMTSCTKSSFFFNVKFLYI 15
           A  + ++  CT  S F NV  ++I
Sbjct: 366 ARKAQIVEKCT--SLFTNVFIVFI 387


>U29377-4|AAA68712.1|  412|Caenorhabditis elegans Hypothetical
           protein K05F1.3 protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 112 AGKFIKRIQKKWIRKSRMHGIGFATTRGPVQYGSHGV 222
           A KF K  +  W    + H +GF  T  P +YG  G+
Sbjct: 48  AAKFDKSGEFPWEIVKQAHSLGFMNTIIPEKYGGPGL 84


>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical
           protein F21H12.6 protein.
          Length = 1374

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 37  KKKEDFV---HDVISSDASANEWTHEREAGKFIKRIQKKWIRK 156
           ++KED V   H++ +S+A      HE+  G   ++   KW R+
Sbjct: 181 ERKEDVVGPSHNIAASEALKQLTEHEKVVGGTSEKTSDKWARE 223


>AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 5 protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +1

Query: 103 EREAGKFIKRIQKKWIRKSRMHGIGFATTRGPVQYGSHGVG*TGFVSLRADTTRRGTCRH 282
           +++  + I+ +      K R   +G    +G + YG  G G T      A  T+    + 
Sbjct: 183 DKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQTKSTFLKL 242

Query: 283 RGPQ 294
            GPQ
Sbjct: 243 AGPQ 246


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 268 GTCRHRGPQGQGLLGRDLPHCSTRATRGICNKRKP 372
           GTC+ R P+ Q         CST +T G+C ++ P
Sbjct: 608 GTCKDRFPKSQ---------CSTYSTNGMCTQQPP 633


>Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical
           protein M03C11.5 protein.
          Length = 676

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +2

Query: 89  TNGHTNGKLENSLNGYKKNGYVNHECTE-SVSLRHAAPFSTDPMALAERDSCHY----GR 253
           T+G   G L N ++G  K+G  ++  T   + L   A    + +    +D   Y    GR
Sbjct: 173 TDGFVKGLLSNGVSGAGKDGKKSNTLTRFYIFLMDEAKLEVEEIVDYLKDPEKYSRLGGR 232

Query: 254 IPRAAALAGTAG 289
           +P+   L G  G
Sbjct: 233 LPKGVLLVGPPG 244


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 55  VHDVISSDASANEWTHEREAGKFIKRIQKKWIRKSRMHGIGFATTR 192
           ++D+++S+AS  ++T+ R     +    K WI  S     GF+ T+
Sbjct: 525 LNDLLASNASFLQFTNLRIPDTQLNLFLKHWIAGSNQRQEGFSLTK 570


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 119 FPASRSCVHSLAEASLLMTSCTKSSFFF 36
           FP + S +HS+   SLL T+    SF+F
Sbjct: 63  FPLTISLIHSVHPHSLLATTVFPLSFYF 90


>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 89  TNGHTNGKLENSLNGYKKNGYVNHECTESVSLRHAAPFS 205
           T+GHT G       G + NGYVN    +     H  P S
Sbjct: 168 TDGHTTGTDGFHYPGTEPNGYVNEHGQQYCMEMHIHPSS 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,839,844
Number of Sequences: 27780
Number of extensions: 141051
Number of successful extensions: 450
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)