Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1736
         (373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.38 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   0.88 
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   0.88 
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   0.88 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   0.88 
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   1.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   2.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   2.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   2.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 92  NGHTNGKLENSLNGYKKNGYVNHE 163
           N + N    N+ N Y  N Y N++
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYNNYK 350


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 80  PPLTNGHTNGKLENSLNGYKKNGYVNHECTESVSLRHAAP 199
           P + +  +N  + N+ N YKK  Y N    E + +    P
Sbjct: 79  PKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVP 118


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 80  PPLTNGHTNGKLENSLNGYKKNGYVNHECTESVSLRHAAP 199
           P + +  +N  + N+ N YKK  Y N    E + +    P
Sbjct: 79  PKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVP 118


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 80  PPLTNGHTNGKLENSLNGYKKNGYVNHECTESVSLRHAAP 199
           P + +  +N  + N+ N YKK  Y N    E + +    P
Sbjct: 79  PKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVP 118


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 80  PPLTNGHTNGKLENSLNGYKKNGYVNHECTESVSLRHAAP 199
           P + +  +N  + N+ N YKK  Y N    E + +    P
Sbjct: 312 PKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVP 351


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 80  PPLTNGHTNGKLENSLNGYKKNGYVNHECTESV 178
           P + +  +N  + N+ N YKK  Y N    E +
Sbjct: 79  PKIISSLSNKTIHNNNNNYKKLQYYNINYIEQI 111


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 143 NGYVNHECTESVSLRHAAPFSTDP--MALAERDS 238
           +G   +EC E V  + A   + DP  M LA +D+
Sbjct: 64  SGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDN 97


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 143 NGYVNHECTESVSLRHAAPFSTDP--MALAERDS 238
           +G   +EC E V  + A   + DP  M LA +D+
Sbjct: 64  SGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDN 97


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 143 NGYVNHECTESVSLRHAAPFSTDP--MALAERDS 238
           +G   +EC E V  + A   + DP  M LA +D+
Sbjct: 64  SGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDN 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,800
Number of Sequences: 438
Number of extensions: 2295
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)