Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1732
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.3  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   4.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   5.2  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 170 PTTKNRYTLYWCLFQMFSLIFLFYIATLKFNLLFF 274
           P T +  +L+ CL   F  +  F   +  F+ LFF
Sbjct: 104 PFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFF 138


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 FSITLI*PTTKNRYTLYWCLFQMFSLIFLFYI 244
           +SI +I  ++ + Y+ +W +FQ F   FL  I
Sbjct: 391 YSIFIILLSSNSHYSQFWAIFQAFVWRFLHSI 422


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 340 RLTIGRIGTGPPPRVD 293
           R  IGRIG GPP R +
Sbjct: 158 RRRIGRIGLGPPKRAE 173


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 322 IGTGPPPRVDLYFESTKKK 266
           +GT PP   D++F + KKK
Sbjct: 133 LGTIPPEHPDVFFHNLKKK 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,776
Number of Sequences: 5004
Number of extensions: 29943
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)