Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1732
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   0.73 
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   5.1  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     27   6.8  
08_01_0416 + 3691117-3691707                                           27   6.8  
07_01_0594 + 4428440-4429837                                           27   6.8  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    27   6.8  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    27   9.0  
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552...    27   9.0  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 342 ITIHWPSFYNVV-TGKTLALPNLIALQH 422
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 354 WPSFYNVV-TGKTLALPNLIALQH 422
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 354 WPSFYNVV-TGKTLALPNLIALQH 422
           W  F N+V +G TL+LP  + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437


>08_01_0416 + 3691117-3691707
          Length = 196

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 303 GGGPVPIRPIVSRITIHWPSFYNVVT---GKTLALPNLIA 413
           GGGP P+ P++  + + W ++   +T    K   LP  +A
Sbjct: 19  GGGPSPVVPLLIVVALVWVNYNETLTEWYDKAANLPGTVA 58


>07_01_0594 + 4428440-4429837
          Length = 465

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -1

Query: 349 IVIRLTIGRIGTGPPPRVDLYFESTKKKKIEF 254
           +V+R++I   G+  PPRVD + ++ +++ I +
Sbjct: 304 MVLRVSIPPPGSASPPRVDKFADAPRRESIRW 335


>06_03_0650 +
           23157130-23157582,23157687-23157898,23157982-23158128,
           23158214-23158347,23158442-23158551,23158711-23158817,
           23159045-23159183,23159286-23159402,23159737-23159844,
           23159927-23159998,23160108-23160230,23160336-23160495,
           23160585-23160706,23160825-23160962,23161042-23161184,
           23161305-23161367,23161567-23161630,23161709-23161844,
           23162123-23162196,23162764-23162858,23162951-23162982,
           23163104-23163276
          Length = 973

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 400 GNARVFPVTTL*NDGQ*IVIRLTIGRIGTGPPPR 299
           G   ++   TL  D +  V+RLT    GTG PPR
Sbjct: 189 GRKNLYTAGTLPFDAREFVVRLTDDDDGTGVPPR 222


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +3

Query: 369 NVVTGKTLALPNLIALQHI 425
           N +TG+ +ALP++I ++H+
Sbjct: 171 NPITGEQIALPSVITIEHV 189


>03_05_0820 + 27951971-27954236,27954746-27955008,27955169-27955288,
            27957790-27957856,27958310-27958515
          Length = 973

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 194  LYWCLFQMFSLIFLFYIATLKFNLLF 271
            L++ +FQM  ++ LFY+  L F + F
Sbjct: 940  LFFAMFQMKLVVILFYLVILLFAMAF 965


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,102
Number of Sequences: 37544
Number of extensions: 179161
Number of successful extensions: 304
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)