Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1732
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   6.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.0  

>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -3

Query: 254 LKLQYKIKISN*TFGINTNIRYNDF 180
           +K++Y ++++     ++  +R+NDF
Sbjct: 76  IKMEYSVQLTFREQWLDERLRFNDF 100


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 146 TFSITLI*PTTKNRYTLYWCLFQMFSLIFLFYIATLKFNLLFF 274
           T++IT   P  K  Y     +  +F LI     + L FNLLFF
Sbjct: 114 TYNITNSTPLLKKLYGGNSTI--IFLLIRFKSFSLLNFNLLFF 154


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 380 SHDVVKRRPVNCNTTHYR 327
           S +  K++P +C+T  YR
Sbjct: 560 SDECNKKQPSDCDTLEYR 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,906
Number of Sequences: 438
Number of extensions: 2161
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)