Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1731
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 60 3e-10
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 60 3e-10
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 60 3e-10
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 60 3e-10
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 60 3e-10
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 60 3e-10
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 60 3e-10
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 60 3e-10
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 60 3e-10
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 60 3e-10
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 60 3e-10
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 28 1.3
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 28 1.3
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 1.7
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 26 3.9
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 26 5.2
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 26 5.2
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 6.9
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 25 6.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.1
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 9.1
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -2
Query: 371 FGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLS 192
FG+P++II+D + FTS ++D+ + +P+ +GQ ER +Q + +L +
Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100
Query: 191 ADDPTKWYRRISGVQRCLNSTYQRSIGMTPFELL 90
+ P W IS VQ+ N+ + MTPFE++
Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIV 1134
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 609 ILIWHKKEKKRDTLHPLDKGDVPLATYHIDHLGPLTSTHKNYKHILT-VVDGFTKFTWI 436
+L W++ KK DT + + + + H D + P + ++NY T VV+ F + I
Sbjct: 364 LLDWNENVKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTI 422
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 609 ILIWHKKEKKRDTLHPLDKGDVPLATYHIDHLGPLTSTHKNYKHILT-VVDGFTKFTWI 436
+L W++ KK DT + + + + H D + P + ++NY T VV+ F + I
Sbjct: 364 LLDWNENVKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTI 422
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 470 LSWMDLLNSPGSTLRKTLSTEETLDKLRIQQQT 372
L WM + NSPGST R+ + E L K I+ +T
Sbjct: 4 LRWMGM-NSPGSTDRRKSTWEAELPKPSIRPET 35
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 528 DMSPAEHLLYPTDVKYPSSFP 590
D +P E LYP +K+PS +P
Sbjct: 46 DGTPFEGGLYPATLKFPSDYP 66
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 154 PEIRLYHFVGSSALSLLKTLMITWWIL 234
PE+ L++ + S SL + +I WWI+
Sbjct: 210 PEVWLFNQIFSHRNSLTRIKIIIWWII 236
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 279 LHYYYWTATRKWPSRENPP 223
++YY W A R+ SRE+ P
Sbjct: 95 IYYYRWKAARRIASREHEP 113
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = -1
Query: 93 SFWKQLTRQATVMFQGHDLQ 34
S+W ++ +Q +V+FQG++L+
Sbjct: 74 SWWPEILQQFSVVFQGNELK 93
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 431 LRKTLSTE-ETLDKLRIQQQTFGSPQKIISDRNAAFTSTNFQDYCKEEGITHYTITTGQP 255
L+K L+ + T+D LRI T S Q + +A + +FQ + + T++T T
Sbjct: 80 LQKFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTAS 139
Query: 254 RGNGQVERI 228
N ++E I
Sbjct: 140 E-NKKIESI 147
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 245 GQVERIHQVIISVLSKLSADDPTKWYRRISGVQRCLNSTYQR 120
G V R+H+ ISV K D P+ R+S V+ TY+R
Sbjct: 122 GVVTRVHERHISVALKSEEDIPSS-VTRLSVVKLVNRVTYER 162
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 158 SGVQRCLNSTYQR--SIGMTPFELLFGNSSRDRQRSC 54
+G++ +ST + ++G+ LL GNSS D +SC
Sbjct: 476 NGMENTKDSTLMKPEALGIIFGPLLLGNSSTDLSKSC 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,791
Number of Sequences: 5004
Number of extensions: 54669
Number of successful extensions: 177
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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