Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1731
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    48   7e-06
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    48   7e-06
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    48   7e-06
Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
 Frame = -2

Query: 470  LSWMDLLNSPGSTLRKTLSTEETLDKLRIQQQTFGS---PQKIISDRNAAFTSTNFQDYC 300
            L+ +DL    G+ +       ET+ K  +++   G    P K+++D+   F +  F  + 
Sbjct: 1642 LTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFT 1701

Query: 299  KEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLSADDPTKWYRRISGVQRCLNSTYQR 120
                I H T      R NG VER ++ I+ ++ K +A  P +W  ++       N+    
Sbjct: 1702 HMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTA-VPMEWDDQVVYAVYAYNNCVHE 1760

Query: 119  SIGMTPFELLFG 84
            + G TP  L+ G
Sbjct: 1761 NTGETPMFLMHG 1772


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
 Frame = -2

Query: 470  LSWMDLLNSPGSTLRKTLSTEETLDKLRIQQQTFGS---PQKIISDRNAAFTSTNFQDYC 300
            L+ +DL    G+ +       ET+ K  +++   G    P K+++D+   F +  F  + 
Sbjct: 1545 LTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFT 1604

Query: 299  KEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLSADDPTKWYRRISGVQRCLNSTYQR 120
                I H T      R NG VER ++ I+ ++ K +A  P +W  ++       N+    
Sbjct: 1605 HMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTA-VPMEWDDQVVYAVYAYNNCVHE 1663

Query: 119  SIGMTPFELLFG 84
            + G TP  L+ G
Sbjct: 1664 NTGETPMFLMHG 1675


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
 Frame = -2

Query: 470  LSWMDLLNSPGSTLRKTLSTEETLDKLRIQQQTFGS---PQKIISDRNAAFTSTNFQDYC 300
            L+ +DL    G+ +       ET+ K  +++   G    P K+++D+   F +  F  + 
Sbjct: 1556 LTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFT 1615

Query: 299  KEEGITHYTITTGQPRGNGQVERIHQVIISVLSKLSADDPTKWYRRISGVQRCLNSTYQR 120
                I H T      R NG VER ++ I+ ++ K +A  P +W  ++       N+    
Sbjct: 1616 HMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTA-VPMEWDDQVVYAVYAYNNCVHE 1674

Query: 119  SIGMTPFELLFG 84
            + G TP  L+ G
Sbjct: 1675 NTGETPMFLMHG 1686


>Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical
           protein F21A3.8 protein.
          Length = 150

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 594 KKEKKRDTLHPLDKGDVPLATYHIDHLGPLTSTHKNY 484
           + E +R   H ++  D P A+YH +H    + THK Y
Sbjct: 39  QNELRRRQSHQVE--DDPPASYHTEHQSTPSHTHKKY 73


>Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical
           protein R53.4 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 83  FQKEVQKVSYQYFSGTCYSNSV-VLLKFVYTTS 178
           F + + +V   Y+SG  Y+N+V V+ +F++  S
Sbjct: 100 FMRNIWRVHNLYYSGPVYNNTVKVIFRFIFAYS 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,871
Number of Sequences: 27780
Number of extensions: 303097
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)