Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1730
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    29   0.59 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    28   1.0  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    28   1.0  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.1  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   4.1  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   5.5  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -3

Query: 359  DTSEVFYISFYKF*NFKLLSCKVSKVSLKPIKGFQASKSFLKAKNKNE 216
            DTS+V Y+  Y F N  ++SCK S     P+    AS   LK+++K+E
Sbjct: 931  DTSDVDYLLMYNFDNNTIMSCKGSSSIPGPV--LLAS---LKSQSKDE 973


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 415 LQFLH*LIERNFVPSGSPLTPLKFFIYLFI 326
           ++ LH    RN V +G  ++P +FF+Y+FI
Sbjct: 241 IKTLHRKDLRNAVANGWRISPFRFFLYVFI 270


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 275 KPIKGFQASKSFLKAKNKNEI 213
           KP K   ASKS LK K KNE+
Sbjct: 13  KPFKSKHASKSSLKEKYKNEV 33


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 54  MSSGTRRSGLSLDNILNFIPYNLLTI 131
           +S  +   G+  +NI  ++PY++LTI
Sbjct: 108 LSDASDPEGIYTNNIFTYLPYDILTI 133


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 54  MSSGTRRSGLSLDNILNFIPYNLLTI 131
           +S  +   G+  +NI  ++PY++LTI
Sbjct: 108 LSDASDPQGIYTNNIFTYLPYDILTI 133


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 410 IPSLVNRKELRSIGVSLDTSEVFYISFYKF*NFKLLSCKVSKVSLKP 270
           +  L+NR     +G   DT+E+    F+   N+ LLS K  +   KP
Sbjct: 536 VRGLLNRNPNHRLGAVADTTELKEHPFFADINWDLLSKKKVQPPFKP 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,828
Number of Sequences: 5004
Number of extensions: 38907
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)