Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1730
         (544 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86547-1|BAA13109.1| 2064|Drosophila melanogaster still life typ...    30   2.4  
D86546-1|BAA13108.1| 2044|Drosophila melanogaster still life typ...    30   2.4  
AY118305-1|AAM48334.1| 2061|Drosophila melanogaster GH10341p pro...    30   2.4  
AE014296-987|AAF50756.3| 2052|Drosophila melanogaster CG5406-PA,...    30   2.4  
AE014296-986|AAS65075.1| 2061|Drosophila melanogaster CG5406-PC,...    30   2.4  
AE014296-985|AAF50755.3| 2072|Drosophila melanogaster CG5406-PB,...    30   2.4  

>D86547-1|BAA13109.1| 2064|Drosophila melanogaster still life type 1
            protein.
          Length = 2064

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -3

Query: 386  ELRSIGVSLDTSEVFYISFYK-F*NFKLLSCKVSKVSLKPIKGFQASKSFLKAKNKNEIH 210
            + R++  ++ ++ ++Y++ +K + +F     K  KV L P +G  A + FL A+N  + H
Sbjct: 1508 QFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKV-LHPNEGNHALQEFLAARNPKQQH 1566

Query: 209  S 207
            S
Sbjct: 1567 S 1567


>D86546-1|BAA13108.1| 2044|Drosophila melanogaster still life type 2
            protein.
          Length = 2044

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -3

Query: 386  ELRSIGVSLDTSEVFYISFYK-F*NFKLLSCKVSKVSLKPIKGFQASKSFLKAKNKNEIH 210
            + R++  ++ ++ ++Y++ +K + +F     K  KV L P +G  A + FL A+N  + H
Sbjct: 1488 QFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKV-LHPNEGNHALQEFLAARNPKQQH 1546

Query: 209  S 207
            S
Sbjct: 1547 S 1547


>AY118305-1|AAM48334.1| 2061|Drosophila melanogaster GH10341p protein.
          Length = 2061

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -3

Query: 386  ELRSIGVSLDTSEVFYISFYK-F*NFKLLSCKVSKVSLKPIKGFQASKSFLKAKNKNEIH 210
            + R++  ++ ++ ++Y++ +K + +F     K  KV L P +G  A + FL A+N  + H
Sbjct: 1505 QFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKV-LHPNEGNHALQEFLAARNPKQQH 1563

Query: 209  S 207
            S
Sbjct: 1564 S 1564


>AE014296-987|AAF50756.3| 2052|Drosophila melanogaster CG5406-PA,
            isoform A protein.
          Length = 2052

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -3

Query: 386  ELRSIGVSLDTSEVFYISFYK-F*NFKLLSCKVSKVSLKPIKGFQASKSFLKAKNKNEIH 210
            + R++  ++ ++ ++Y++ +K + +F     K  KV L P +G  A + FL A+N  + H
Sbjct: 1496 QFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKV-LHPNEGNHALQEFLAARNPKQQH 1554

Query: 209  S 207
            S
Sbjct: 1555 S 1555


>AE014296-986|AAS65075.1| 2061|Drosophila melanogaster CG5406-PC,
            isoform C protein.
          Length = 2061

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -3

Query: 386  ELRSIGVSLDTSEVFYISFYK-F*NFKLLSCKVSKVSLKPIKGFQASKSFLKAKNKNEIH 210
            + R++  ++ ++ ++Y++ +K + +F     K  KV L P +G  A + FL A+N  + H
Sbjct: 1505 QFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKV-LHPNEGNHALQEFLAARNPKQQH 1563

Query: 209  S 207
            S
Sbjct: 1564 S 1564


>AE014296-985|AAF50755.3| 2072|Drosophila melanogaster CG5406-PB,
            isoform B protein.
          Length = 2072

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -3

Query: 386  ELRSIGVSLDTSEVFYISFYK-F*NFKLLSCKVSKVSLKPIKGFQASKSFLKAKNKNEIH 210
            + R++  ++ ++ ++Y++ +K + +F     K  KV L P +G  A + FL A+N  + H
Sbjct: 1516 QFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKV-LHPNEGNHALQEFLAARNPKQQH 1574

Query: 209  S 207
            S
Sbjct: 1575 S 1575


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,633,921
Number of Sequences: 53049
Number of extensions: 414198
Number of successful extensions: 889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)