Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1730
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-6|AAQ01536.1|  365|Caenorhabditis elegans Serpentine rece...    29   2.9  
AL110500-15|CAD92406.1|  209|Caenorhabditis elegans Hypothetical...    27   6.6  

>U80028-6|AAQ01536.1|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein123 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 260 FQASKSFLKAKN-KNEIHSRAKSMSIVCMYLFIYVIEC 150
           F+ SK   K  +  N  +SR KS  ++C+ +  +V+EC
Sbjct: 248 FKTSKKRTKISSVSNNRNSRGKSGLVLCVAIMFFVVEC 285


>AL110500-15|CAD92406.1|  209|Caenorhabditis elegans Hypothetical
           protein Y87G2A.15 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 193 CLLYVCIYLYMSLNA*NKVPIMVSKLYGMKFSILSKLRPDRRV 65
           CLL   ++LY +      VPI+VS+L G KFS      P  +V
Sbjct: 8   CLL---VFLYSTCQIAFSVPIVVSELNGEKFSAAPNNTPITKV 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,693,416
Number of Sequences: 27780
Number of extensions: 220775
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)