Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1728
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3LUS8 Cluster: Vacuolar ATPase V0 domain subunit a; n=...    34   3.0  
UniRef50_Q9U0M1 Cluster: Putative uncharacterized protein PFD032...    33   4.0  
UniRef50_A3UB63 Cluster: Sensor protein; n=5; Bacteroidetes|Rep:...    33   5.3  
UniRef50_Q8I2V4 Cluster: Putative uncharacterized protein PFI097...    33   7.0  
UniRef50_A5KC14 Cluster: Variable surface protein Vir15-related;...    33   7.0  

>UniRef50_A3LUS8 Cluster: Vacuolar ATPase V0 domain subunit a; n=6;
           Saccharomycetales|Rep: Vacuolar ATPase V0 domain subunit
           a - Pichia stipitis (Yeast)
          Length = 947

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 69  HGIKNNIMYKNSYKTKSKLPFAFPFLNISLIKLSNVNCYVFF 194
           HG +NN+++ NSYK K  +   F  +N SL   S VN Y +F
Sbjct: 616 HGAENNLLFTNSYKMKLSVLMGFVHMNYSLF-FSLVN-YRYF 655


>UniRef50_Q9U0M1 Cluster: Putative uncharacterized protein PFD0320c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFD0320c - Plasmodium falciparum
           (isolate 3D7)
          Length = 1130

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 31/111 (27%), Positives = 52/111 (46%)
 Frame = +3

Query: 33  NQTKATTKHTSLHGIKNNIMYKNSYKTKSKLPFAFPFLNISLIKLSNVNCYVFFFLNS*T 212
           N  K  TKH S H  KNN    N+ K K       P  +I+++K+     Y+FF   +  
Sbjct: 661 NNIKHNTKHNSKH--KNNNNNNNNNKEK-------PNDDINIVKMKKKRTYIFFINKTYK 711

Query: 213 N*LHTIQLKLCMSTYKFCKCLRNYRIEYNVRYLWKKGRLFYLLTYREKIQL 365
             +H  +      ++KF   +R + +     Y++KK  L Y +T +++I L
Sbjct: 712 LFIHNYK----NISFKFENLMRKHFVA-KYDYIFKK--LSYYITLKKEIDL 755


>UniRef50_A3UB63 Cluster: Sensor protein; n=5; Bacteroidetes|Rep:
           Sensor protein - Croceibacter atlanticus HTCC2559
          Length = 364

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
 Frame = +3

Query: 231 QLKLCMSTYKFCKCL----RNYRIEYNVRYLWKKGRLFYLLTYREKIQLNSI*FSIFIRF 398
           +L L  S Y     L    +   +EYNV+   K+     L    +K+QL  I F++ I  
Sbjct: 219 ELNLVTSVYNSLSLLEASFKKANVEYNVKIEDKE-----LFVRADKVQLMQIIFNLIINA 273

Query: 399 DHFTDPIPLIKLVLSKTKSYICF 467
            +FT    L+ + +S+TK +I F
Sbjct: 274 IYFTPEHGLVTISVSETKMHIVF 296


>UniRef50_Q8I2V4 Cluster: Putative uncharacterized protein PFI0975c;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            PFI0975c - Plasmodium falciparum (isolate 3D7)
          Length = 3381

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +3

Query: 36   QTKATTKHTSLHGIKNNIMYKNSYKTKSKLPFAFPFL----NISLIKLSNVNCYVFFFLN 203
            Q      H +   +KNN ++  + K K K  +   F+    N ++   +N N Y++   +
Sbjct: 1389 QDNEKENHINEPNVKNNFIHIENVKNKKKYIYTESFMKNNNNNNIYDNNNSNNYIY---D 1445

Query: 204  S*TN*LHTIQLKLCMSTYKFCKCLRNYRIEYNVRY 308
            + TN +   ++K C + Y +   L+N    YN  Y
Sbjct: 1446 NYTNVMKN-KIKTCCTKYTYKNVLKNRHKIYNTNY 1479


>UniRef50_A5KC14 Cluster: Variable surface protein Vir15-related;
           n=1; Plasmodium vivax|Rep: Variable surface protein
           Vir15-related - Plasmodium vivax
          Length = 367

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +3

Query: 237 KLCMSTY--KFCKCLRNYRIEYNVRY 308
           K C+S Y  K+CK L  YR++YN +Y
Sbjct: 198 KKCISNYDSKYCKALIEYRVKYNTQY 223


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,679,239
Number of Sequences: 1657284
Number of extensions: 10854944
Number of successful extensions: 25513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25509
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)