Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1728
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    26   3.7  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   5.0  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    26   5.0  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   6.5  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   6.5  

>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 YKFCKCLRNYRIEYNVRYLWKKGR 326
           +K C+ LRNYRI+  ++   +K R
Sbjct: 92  FKTCEMLRNYRIQNGIKIYSQKTR 115


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 403 WSNRMKIENQILFNWIFSL*VRR*NSL 323
           + + MKI+  +L NW+  L + + NSL
Sbjct: 460 YKSTMKIQKSLLVNWLLELMLAKLNSL 486


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 75  IKNNIMYKNSYKTKSKLPFAFPFLNISLIKLSNVNCYV 188
           +K  ++YK+     S LPF+F     ++  L N++ YV
Sbjct: 175 MKPTLLYKSLSNEFSSLPFSFMPAKANVNDLFNISAYV 212


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 69  HGIKNNIMYKNSYKTKSKLPFAFPFLNISL-IKLSNVNCYVFF 194
           H   NN+++ NSYK K  +      +   L + LSN   Y FF
Sbjct: 511 HSADNNLLFMNSYKMKLSIILGVIHMTFCLFLSLSN---YRFF 550


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +3

Query: 27  FANQTKATTKHTSLHGIKNNIMYKNSYKTKSKLPFAFPFLNISLIKLSNVN 179
           +  +  A+ +HT     K N++   ++     LPF  P L ++   L   N
Sbjct: 232 YTKEDLASLQHTRPLSTKPNVVNGATHSPSPSLPFKTPLLPVTKTPLEEAN 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,144
Number of Sequences: 5004
Number of extensions: 52876
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)