Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1728
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 144 LNISLIKLSNVNCYVFFFLNS*TN*LHTIQLKLCMSTYKFCKC 272
           +N+ L+ L+++ C   +FL +    L+   LK+ +  +K  +C
Sbjct: 142 INLGLVNLTSIGCSNIYFLRNTVRLLNLPNLKVILKNWKIAQC 184


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 605 VCKYYFSCNFRCVFIFIMK*KTTKNIFIQN*NLIRLTKYFV 483
           VCKY F  N +C+  F    +  K++F+ + +L+   KYF+
Sbjct: 187 VCKYIFETNEKCIRHFFE--QHYKHLFLDSRHLLLNYKYFL 225


>AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical
           protein R148.4 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 380 FDFHSIRPFYRSDTIN*IGSVEN*ILYLFLNAYVTQNILLIV 505
           F F+   P ++  T +  G VEN +LYL L A  T  +++ +
Sbjct: 7   FSFYGALPSFKP-TRHCCGIVENSVLYLLLTALTTLQLIVFI 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,579
Number of Sequences: 27780
Number of extensions: 281752
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)