Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1727
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 220 1e-58
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 109 2e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 7e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 7e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 87 1e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 1e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 60 3e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 58 1e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 220 bits (538), Expect = 1e-58
Identities = 100/114 (87%), Positives = 107/114 (93%)
Frame = -3
Query: 627 FQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 448
FQPS LG+E +GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALA
Sbjct: 262 FQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALA 321
Query: 447 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 286
PS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 322 PSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 109 bits (263), Expect = 2e-25
Identities = 49/114 (42%), Positives = 78/114 (68%)
Frame = -3
Query: 627 FQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 448
F P +G EASG+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++
Sbjct: 267 FNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAIS 326
Query: 447 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 286
++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 327 GKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 7e-21
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -3
Query: 594 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 421
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 420 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 313
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 7e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -3
Query: 594 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 415
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 414 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 289
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 87.4 bits (207), Expect = 1e-18
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 12/117 (10%)
Frame = -3
Query: 627 FQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL- 451
FQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLW 321
Query: 450 -------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 313
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 322 FERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.9 bits (141), Expect = 1e-10
Identities = 27/109 (24%), Positives = 57/109 (52%)
Frame = -3
Query: 627 FQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 448
F PS +G++ +GI E + + + ++ ++ L +N +++GG PG+ R+++E+T++
Sbjct: 603 FSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIM 662
Query: 447 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 301
P I + W G S + F+ ++++EY E GP +
Sbjct: 663 PVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 60.1 bits (139), Expect = 3e-10
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Frame = -3
Query: 585 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST----------- 439
E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 438 ---MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 295
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 58.0 bits (134), Expect = 1e-09
Identities = 33/112 (29%), Positives = 54/112 (48%)
Frame = -3
Query: 627 FQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 448
F PS + + +GI E S+ +I+ L N V GG +PG R+ E+ +LA
Sbjct: 288 FSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLA 347
Query: 447 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 292
P+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 348 PANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 540 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 370
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 369 SLSTFQQMWISKQEYDESGPSIVHRK 292
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 393 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 292
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 401 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 306
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 468 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 358
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 511 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 332
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 331 GV 326
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 334 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 420
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,598
Number of Sequences: 5004
Number of extensions: 49266
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -