Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1726
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    30   0.29 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   2.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   2.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.3  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 20   QYHHSIKIGL*NWSMIFIHLKFTTFFINIKYNKIVKL 130
            +Y H++++ L  W +IF H + TT+  NIK + I +L
Sbjct: 1316 KYEHALRVYLLVWDLIFYHFEETTY--NIKLSIINQL 1350


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 170 NITVTQIVNNHKRMYNIIYLRLCSLLLRFS 259
           N+ + QI  NH   Y ++ L L   LLRFS
Sbjct: 107 NLALLQICLNHVNEYPLVLLTLTIRLLRFS 136


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 174 LRSLKL*TIINACIILYIYDYVHYYL 251
           L+SLK  TI+ +C++++ Y ++ YY+
Sbjct: 344 LKSLKDRTILGSCVLIFTY-FMSYYI 368


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 353 KYKITQRDPSHSNLKQPRGLYRLGFGI 433
           KY + QRD S S  K+ + L++   GI
Sbjct: 564 KYSLAQRDVSKSKNKELKELFKYSMGI 590


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 40   NWIIKLVHDFHSFKIHNILYKYK 108
            NW++  V  F SF I NI+  +K
Sbjct: 1069 NWMMNQVPSFSSFLISNIIRNWK 1091


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,850
Number of Sequences: 5004
Number of extensions: 45581
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)