Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1726
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    30   1.2  
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    30   1.6  
01_06_0739 - 31601656-31602233,31602777-31602906                       28   4.9  

>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
            18238033-18238041,18238096-18238248
          Length = 1465

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 327  NSKLFPDQKLCLKIIPISHSSVVENL 250
            N  +FP   +CL+I+ I+HS+V+E L
Sbjct: 1083 NLVVFPTNFICLRILVITHSNVLEGL 1108


>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
            27059759-27059866,27060314-27060406,27060499-27060669,
            27061505-27061757,27061860-27062138,27062939-27063273,
            27063364-27064332,27064711-27065182,27065243-27065291,
            27066564-27066804,27067606-27067695,27068172-27068294,
            27068365-27068418
          Length = 1175

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/90 (28%), Positives = 35/90 (38%)
 Frame = +2

Query: 242  LLLRFSTTEE*EIGMIFRHNF*SGNNLEFLNEMIS**KYKITQRDPSHSNLKQPRGLYRL 421
            L L F+ TEE     I       G N+   NE      + I     +   L      YR 
Sbjct: 964  LCLDFTLTEELGGRRIVHELRPGGKNISVTNENKLHYVHAIADYKLNRQILPFANAFYR- 1022

Query: 422  GFGISVGPSFLMTFNVSLFGLAVSDGISSF 511
            G G  + PS+L  FN + F   +S G+  F
Sbjct: 1023 GLGDLISPSWLSLFNANEFNQLLSGGLQDF 1052


>01_06_0739 - 31601656-31602233,31602777-31602906
          Length = 235

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 586 KRKSGSKRYSKNTGRCKICHPRN 518
           +R+SG +  S N GRCKI H ++
Sbjct: 40  RRRSGLQVASSNLGRCKIAHVKS 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,276,549
Number of Sequences: 37544
Number of extensions: 228631
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)