Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1726
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   4.4  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    28   4.4  
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    28   4.4  
Z81563-2|CAB04564.1|  181|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical
           protein C47F8.8 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 559 SKNTGRCKICHPRNTYKRRDTI*HCQA 479
           SKN G C++CH   T +R   I  C A
Sbjct: 5   SKNRGPCQVCHNTETTRRHFGIISCTA 31


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 591 DRKENLVQKDTPKIRAGVKSATQEIPIK-EEIPSDT-AKPNKETLKVIKKDGPTEIPNPN 418
           + KE+  Q DTPK  +   ++  + P +  E+  +T    N+E +K  K DG  +   PN
Sbjct: 22  EEKESSEQPDTPKTSSEKSASRSQSPRESREVSQETETSENQEKIKE-KDDGDDQPGTPN 80

Query: 417 L*RPR 403
             R R
Sbjct: 81  SYRSR 85


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
            protein T20D3.11 protein.
          Length = 1843

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 383  HSNLKQPRGLYRLGFGISVGPSFLMTFNVSLFG 481
            H   +  R LY + FGI V    +MTF  S FG
Sbjct: 1223 HPKFRYIRDLYPIMFGIDVICFLIMTFGYSAFG 1255


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 591 DRKENLVQKDTPKIRAGVKSATQEIPIK-EEIPSDT-AKPNKETLKVIKKDGPTEIPNPN 418
           + KE+  Q DTPK  +   ++  + P +  E+  +T    N+E +K  K DG  +   PN
Sbjct: 22  EEKESSEQPDTPKTSSEKSASRSQSPRESREVSQETETSENQEKIKE-KDDGDDQPGTPN 80

Query: 417 L*RPR 403
             R R
Sbjct: 81  SYRSR 85


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 473 LFGLAVSDGISSFIGISWVADFTPA 547
           LFGLA+ D ISS + + ++A F P+
Sbjct: 114 LFGLAIVDAISSVLFLPFMAQFHPS 138


>Z81563-2|CAB04564.1|  181|Caenorhabditis elegans Hypothetical
           protein K04H8.2 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 98  INIKYNKIVKL*IRSNYKYSHYATNITVTQIVNNHKRMYNI 220
           +N  Y K+V +   +N     Y+TN  V Q   NH + YN+
Sbjct: 105 LNSHYGKMVAVKTVTNLTSCDYSTNGNVLQGFINHDQPYNV 145


>Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical
           protein T15H9.5 protein.
          Length = 173

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 522 EIPIKEEIPSDTAKPNKETLKVIKKDGPTEIPNPNL 415
           E  +K+E+ +D  +P  + LK+ KK+   E P  +L
Sbjct: 98  EKDVKKEVKADNNEPLVKNLKIAKKEQEEENPKTDL 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,642
Number of Sequences: 27780
Number of extensions: 249523
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)