Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1725
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 3.1
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 28 5.4
03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797 28 5.4
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478... 28 5.4
06_01_0734 + 5419951-5420475 28 7.1
01_06_1100 + 34530132-34530485,34530544-34530705 28 7.1
12_02_0898 - 24121494-24122120,24122247-24122594,24122984-24123424 27 9.4
10_02_0172 - 6162692-6163066 27 9.4
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 27 9.4
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 29.1 bits (62), Expect = 3.1
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Frame = -2
Query: 320 AIHLVFTIAPPAIGV-EFIRTTWSHCGHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCP 144
A HL +A AI + + G C SR L VPS +SS S C
Sbjct: 1232 AAHLSVALAENAIVILMLVEDHLRSQGQHFCTSRSLDSAVPSASMVSSAAS--RSNSLCR 1289
Query: 143 SSNEACGEY*AVGSGLA-----LPLALLKSMGDGNHSPSGGPYARLHTRA 9
S NE + S L+ LPL +L SM D N S RL + A
Sbjct: 1290 SGNEPMDAGTSRRSSLSTDAGGLPLDVLTSMADSNGQISAAVMERLTSAA 1339
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 7 IALVCRRAYGPPDGEWLPSPMDFSNARGRAK 99
+AL C R G PDG+ LP P D ++ G K
Sbjct: 118 LALACTRNSGSPDGQHLP-PKDTTSMPGLRK 147
>03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797
Length = 442
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 162 RETPWRGAHSIAGWYVAKKISGNALWMTAVAPGSTDELYSDGGRCDGKNEMNG 320
R TPW GAH+ G + + + P +T +++ G RC G+ ++NG
Sbjct: 211 RHTPWLGAHAAKG-----PVRPLRRALQGLDPLTTASMFA-GARCIGERKVNG 257
>01_06_0634 +
30746767-30747012,30747083-30747118,30747554-30747850,
30748482-30748544,30748643-30748696,30748837-30748854,
30749554-30749625,30749731-30749787,30750160-30750236,
30751013-30751094,30751585-30751701,30752083-30752210,
30753074-30753143,30753725-30753765,30753963-30753990,
30754151-30754210
Length = 481
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 287 AIGVEFIRT-TWSHCGHPQCVSRDLFCHVPSGY 192
++G+ ++RT +W HCG+ + L HVP Y
Sbjct: 442 SLGLAYLRTESWVHCGNGMKQAIGLKFHVPEEY 474
>06_01_0734 + 5419951-5420475
Length = 174
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -2
Query: 143 SSNEACGEY*AVGSGLALPLALLKSMGDGNHSPSGGPYARLH 18
S+ A + G GL LA L MGDG G PY R H
Sbjct: 96 SAAAAAADRRGAGGGLMYLLAQLMGMGDGG----GSPYGRWH 133
>01_06_1100 + 34530132-34530485,34530544-34530705
Length = 171
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 294 TARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 166
+A+H H L+ L+ T + + + + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147
>12_02_0898 - 24121494-24122120,24122247-24122594,24122984-24123424
Length = 471
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 162 RETPWRGAHSIAGWYVAKKISGNALWMTAVAPGSTDELYSDGGRCDGKNEMNG 320
R TPW GAHS G + + + P + +++ G RC G+ ++NG
Sbjct: 241 RHTPWLGAHSAKG-----PVRPLRRALQGLDPLTAASMFA-GARCIGERKVNG 287
>10_02_0172 - 6162692-6163066
Length = 124
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Frame = -1
Query: 159 RYDMSFFKRGLWR---VLSGRQRLGSAPGIA---EVHGRR*PLTIRWAVCSSAYKG 10
R+D+ F +G WR + RL A A V RR L WA C S Y G
Sbjct: 9 RFDLVFEMKGRWRREGAAAMAMRLNEAVWHATGGSVWRRRQELAFLWADCESGYDG 64
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 236 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCP 144
QCV++D + SPPRC PS+ +CP
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRC-PSS-SCP 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,877,559
Number of Sequences: 37544
Number of extensions: 438519
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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