Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1724
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    27   2.7  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    27   2.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.5  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   4.7  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   6.1  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.1  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +1

Query: 172 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 297
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
 Frame = +2

Query: 239 SLSTPQIPNXXXXXXXXXXXLSAERGHSL----SPQSPLLTVRDCTASSLMKTSATFSGT 406
           SLST  IP+           LS+    S     S  S +++    ++SS   TS+T S +
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293

Query: 407 AGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSA 577
           + +   P  +++    ++ S +S    +   S+ +    +  ++ P   S T++ S+
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTL---SSSSMSSSSSFSSSPTSSSSTISSSS 347


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 323 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 445
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 323 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 445
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 314 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 478
           GH+ +  S   T    TA+S + +SAT S    T+   +   + D+ T   PAS+
Sbjct: 141 GHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASS 195


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 196 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 306
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 332  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 478
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 332  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 478
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 524 TDSAAQPPVRSPTLARSARHAH 589
           ++SAA PPV SP L RS    H
Sbjct: 479 SNSAASPPVSSPGLRRSHIPVH 500


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 370 FPDENKCDVFWNCW 411
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +2

Query: 299 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 478
           +S     S+ PQS        +ASS   T +T S          +S +  +P+T S   +
Sbjct: 468 VSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPS 527

Query: 479 CGLI 490
             +I
Sbjct: 528 SSII 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,794
Number of Sequences: 5004
Number of extensions: 55868
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)