Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1723
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   0.52 
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   2.1  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   3.7  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   8.5  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   8.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.5  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 312 ELCSESRHFVCSYDFSCTIFLIIIFFVN*TSLRMSSGFGFLLYFRARLANFVGFFF 479
           E+  +S  F+ + DF    F+I+  F N    R+ S    + ++   LA+F G  F
Sbjct: 690 EVVVDSARFITALDFDALTFIILSSFSNEFKKRLKSDGTSIAHWLQGLASFCGRVF 745


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 491 CKSTKKKTNKIR*SGAEIQKKTETAGHSQTSLVDEKNYN*ENRTAEIIGTY 339
           CK    +  K+     E+ ++ E AG+S T   ++ N+N  +   E+IG Y
Sbjct: 238 CKDGNVRIFKVETLCEEVFQEEEDAGNSMT---EDSNFNLNSLKVELIGEY 285


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 437 QKKTETAGHSQTSLVDEKNYN*ENRTAE 354
           +K  E   H   S+ DE  YN E  TAE
Sbjct: 584 KKDVEKEVHDSYSMADESQYNLEKATAE 611


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 354 FSCTIFLIIIFFVN*TSLRMSSGFGFLLYFRARLANFVGF 473
           F+ + F  +I      +++  SGF  L+YF + +   VGF
Sbjct: 331 FNPSNFRALILACGLQAMQQLSGFNSLMYFSSTIFEVVGF 370


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 462 FVGFFFSALAIQLTDNRNHIFDTCQSALAVRNWRETQ 572
           F  FF++  AI  + +  H F+  +  L++ N R++Q
Sbjct: 340 FQYFFYNGDAIAPSADDQHAFEKARDYLSIMNGRQSQ 376


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 134 TLTINPKPILPRVGPLRSIA 75
           +L++NP P +P+V P R I+
Sbjct: 479 SLSLNPPPAMPKVFPERDIS 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,983
Number of Sequences: 5004
Number of extensions: 43939
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)