Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1723
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.25 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.25 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.75 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 405 LRMSSGFGFLLYFRARLANFVGFF-FSALAIQLTDNRNHIF 524
           +R+    GFL Y+R  LAN + +F   AL     D    +F
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVF 101


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 405 LRMSSGFGFLLYFRARLANFVGFF-FSALAIQLTDNRNHIF 524
           +R+    GFL Y+R  LAN + +F   AL     D    +F
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVF 101


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 519 YDSYCQSAVLQEH*KKNQQNSLIGRGNTKENRN 421
           +D  CQS+       KN +NS++ R + KEN N
Sbjct: 619 FDYMCQSS-------KNSENSIMQRASMKENLN 644


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 371 PNYNFFRQLN*SENVQRF 424
           P+YN   QLN +EN++RF
Sbjct: 540 PSYN---QLNYNENIERF 554


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 523 LTPVKVHSLSVIGGKRKFK 579
           L P ++H++   GG +K++
Sbjct: 38  LGPQRIHTVRTRGGNKKYR 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,478
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)