Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1720
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0092 + 985063-985752                                             33   0.29 
07_01_0391 - 2967823-2967975,2968773-2968961                           29   3.6  
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764...    28   6.2  
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137...    28   8.3  

>04_01_0092 + 985063-985752
          Length = 229

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 115 NDYWWPGFTRAGERAKAQPGGRDLLTAAPAPLKETNNSRAAASRMIYHRIG 267
           N+Y+ PGF R  +     PGGR +L      L  T++    AS M  HR G
Sbjct: 159 NNYYRPGFHRLFQHFCIHPGGRRVLDEVQRGLGLTDDD-MEASHMTLHRFG 208


>07_01_0391 - 2967823-2967975,2968773-2968961
          Length = 113

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 280 SESRFRSGGKSFAKQLLLSCWSPLEALGQLLANPSLL 170
           S S  R GG    +  LLSCW PL  + +LL+  S L
Sbjct: 11  SASWCRGGGGRRRQPPLLSCWCPLLMIAELLSIGSAL 47


>10_04_0020 +
           7644329-7644666,7644960-7645146,7645311-7645365,
           7645390-7645438,7645984-7646200
          Length = 281

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 508 RRQRKAIIMTHSLIEVPFRC*LHVFP 585
           RR+R+     H L  +PFRC L + P
Sbjct: 28  RRRREPAFFAHGLHRLPFRCRLELLP 53


>10_08_0161 +
           15312986-15313160,15313250-15313557,15313676-15313754,
           15313856-15314373
          Length = 359

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +1

Query: 145 AGERAKAQPGGRDLLTAAPAP--LKETNNSRAAASRM---IYHRIGIATRLEDTARN 300
           AGE+  A  GG     AAP P  LK   +    AS++   I    G+ T + DTA N
Sbjct: 14  AGEKKDAAGGGEKAAAAAPGPIVLKVELHCAGCASKVKKAIKRAPGVETVVTDTAGN 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,068,400
Number of Sequences: 37544
Number of extensions: 415953
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)