Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1720
(701 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 58 1e-08
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 43 4e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 43 4e-04
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 39 0.008
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 36 0.053
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 36 0.053
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 36 0.053
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 32 0.87
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 32 0.87
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 32 0.87
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 31 1.1
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 58.0 bits (134), Expect = 1e-08
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRF 520
+HI +Q+++++ RL G WFVRN LH DL L ++ + S RY D+ RH NR
Sbjct: 816 SHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRL 875
Query: 519 --SLPPLTTPRILTRR 478
+L PR L RR
Sbjct: 876 ASALNRSRPPRRLNRR 891
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 43.2 bits (97), Expect = 4e-04
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
++ID +Q +SR R+ G W++RN ++H DL ++ + + + +Y +K H N
Sbjct: 807 SNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTN 864
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 43.2 bits (97), Expect = 4e-04
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
++ID +Q +SR R+ G W++RN ++H DL ++ + + + +Y +K H N
Sbjct: 807 SNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTN 864
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 38.7 bits (86), Expect = 0.008
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRH 532
++ + +Q L++R+ R ++VR LH DL L ++ + + + RY D+ RH
Sbjct: 822 SNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRH 877
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 35.9 bits (79), Expect = 0.053
Identities = 12/58 (20%), Positives = 34/58 (58%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
+H++ ++ L++++ R G W++R D+ DL + + +++ +++Y ++ H N
Sbjct: 821 SHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPN 878
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 35.9 bits (79), Expect = 0.053
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERY 553
++ID +Q +S+ R G W+VR+ ++ DL + S+ + E+Y
Sbjct: 809 SNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEKY 857
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 35.9 bits (79), Expect = 0.053
Identities = 12/58 (20%), Positives = 34/58 (58%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
+H++ ++ L++++ R G W++R D+ DL + + +++ +++Y ++ H N
Sbjct: 623 SHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYLERLNVHPN 680
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.9 bits (69), Expect = 0.87
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
T +Q+++++ R + S + R D+ ++S + AS+RY + H+N
Sbjct: 880 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHEN 937
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.9 bits (69), Expect = 0.87
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
T +Q+++++ R + S + R D+ ++S + AS+RY + H+N
Sbjct: 880 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHEN 937
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.9 bits (69), Expect = 0.87
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
T +Q+++++ R + S + R D+ ++S + AS+RY + H+N
Sbjct: 880 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHEN 937
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -3
Query: 699 THIDTLQSLKSRSCRLAVGTSWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN 526
T +Q+++++ R + S + R D+ ++S + AS+RY + H+N
Sbjct: 433 TQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTDHEN 490
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,353,855
Number of Sequences: 53049
Number of extensions: 675340
Number of successful extensions: 1266
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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