Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1720
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 289 YLLSESRFRSGGKSFAKQLLLSCWSPLEALGQLL 188
           Y   E+  R+    F+K  L+  WSP  A+ + L
Sbjct: 178 YSARENELRALSSLFSKGCLVGTWSPDPAINRRL 211


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 289 YLLSESRFRSGGKSFAKQLLLSCWSPLEALGQLL 188
           Y   E+  R+    F+K  L+  WSP  A+ + L
Sbjct: 178 YSARENELRALSSLFSKGCLVGTWSPDPAINRRL 211


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 289 YLLSESRFRSGGKSFAKQLLLSCWSPLEALGQLL 188
           Y   E+  R+    F+K  L+  WSP  A+ + L
Sbjct: 178 YSARENELRALSSLFSKGCLVGTWSPDPAINRRL 211


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 162 GSARREGFANSCPSASKGDQ 221
           GS RR    NSC S   GD+
Sbjct: 399 GSTRRPSRRNSCESQMMGDE 418


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 204 ASKGDQQLKSSCFANDLPPDRNRDSLRRYSEKLSGLMH 317
           A K D Q  S  FAN+ P  ++  ++    E +  L+H
Sbjct: 424 ARKYDVQTDSIIFANNQPYTKDSYTVAGMGETIEDLLH 461


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 543 PYRSTVPMLTSCISVLIRGPGR 608
           PYR   P+++   S  +R PG+
Sbjct: 493 PYRLNKPLMSLITSSEVRQPGK 514


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 585 RKYMKSASERYFDKAMRHDNR 523
           RKY +++ ER  D+A R  +R
Sbjct: 56  RKYRETSKERSRDRAERERSR 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,771
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)