Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1716
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    28   0.072
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.0  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   3.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   6.2  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 534 HTGGPCGADGSGLEGHHPARLPAQRGRVQRALRPEPLRPYH 412
           H   P G   +G  G H A  P+ RG    AL   P RP H
Sbjct: 44  HFNSPAGNAHTGPTGTHDAGFPSPRG----ALGAYPFRPMH 80


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 534 HTGGPCGADGSGLEGHHPARLPAQRGRVQRALRPEPLRPYH 412
           H G   G  G+GL   H A  P  +G          + PYH
Sbjct: 13  HPGYMDGGAGAGLYEPHVAHRPGLQGLHHSPHLNHAMHPYH 53


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 526 PGVGVHGVLADHLAGFVPSHP 588
           PG+G+HG+  D L   +  +P
Sbjct: 42  PGLGLHGLPVDSLHSSMAGYP 62


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 461 AAVYSAPYARNPFDHITDNEIDEYRRDVERKRR 363
           A + +  +   P + + D   D YR   E KRR
Sbjct: 58  AGINAETFKAQPLNELFDVTRDNYRHITELKRR 90


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +1

Query: 103  EWS--PLTVWSPLVLSTWALSAFKKSVVSTSLRTTS 204
            +W+  P T WS    S W  +   +   +T   TTS
Sbjct: 1034 DWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTS 1069


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 494 SRPLPSAPHGPPV 532
           S P  SAP GPP+
Sbjct: 92  SSPQTSAPTGPPI 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,658
Number of Sequences: 336
Number of extensions: 2359
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)