Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1716
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   3.8  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   3.8  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   3.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   5.0  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   6.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   8.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.7  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   8.7  

>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 555 GEDAVNTHTGGPCGADGSGLEG 490
           GE+ +N   GGP G  G G  G
Sbjct: 72  GEEGLNGQPGGPGGGPGEGFPG 93


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 526 PGVGVHGVLADHLAGFVPSHPL 591
           PGVG   V   HLA F+PSHP+
Sbjct: 780 PGVGPICV-KKHLADFLPSHPV 800


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 197 VLSDVDTTDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEGSPS 51
           VL+D+D  D    + +H+     ++  N D  + + S     SK   PS
Sbjct: 114 VLNDIDIYDIETKQWSHIPGMITENQTNDDAKEVNGSDVDEKSKHLYPS 162


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 170 FLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEGSPSKEASTEDSP 24
           F +  R H      +HT +   S  H  + S SS   S S   S+E +P
Sbjct: 65  FRSLRRGHTSGHASEHTSSSRSS--HDESDSMSSSSESDSDSVSSESNP 111


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 477 RLPAQRGRVQRALRPEP 427
           R+  + GRVQ+ALRP P
Sbjct: 157 RMRRREGRVQKALRPTP 173


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 DTTDFLN-AERAHVDSTRGDHTVNGD-HSDAHQSTFSHSSKEGSPSKEASTEDSP 24
           +T D +N   +  V++      +  D H D+  S   HSS E + S+E S ++ P
Sbjct: 271 NTIDLINNRSKTSVENQERTFNLTSDVHLDSPTSPSKHSSIEPNTSQEDSFQELP 325


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 150 GSLRVQEISCINIAQDHFWLASDRRLLGLYSQNSVFVARL 269
           GS+ +  +S +++A  HFW+A       L+S NS+F  +L
Sbjct: 864 GSILLVMMSQVSLASIHFWIA-------LWSGNSLFSLKL 896


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 425 FDHITDNEIDEYRRDVERKRRGNEYDTDLSESEAISAAH 309
           +D  +D +++E   DVE        D+D  +S++   AH
Sbjct: 344 YDGFSDLDVEEDEDDVESSSNEEVSDSDEEDSDSKHTAH 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,973
Number of Sequences: 5004
Number of extensions: 38527
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)