Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1716
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 33 0.24
04_04_0315 - 24331996-24332853 30 1.7
06_03_1345 + 29478768-29479922 29 2.9
02_04_0288 + 21607289-21608251 29 2.9
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 29 3.9
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027 29 3.9
05_01_0533 + 4594169-4595065,4598375-4598983 29 3.9
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626... 28 5.1
07_01_0907 - 7636725-7637681 28 5.1
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 28 5.1
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 28 5.1
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 28 6.8
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713... 28 6.8
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 28 6.8
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385... 27 8.9
03_05_0675 + 26630466-26632070 27 8.9
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 27 8.9
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 27 8.9
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 32.7 bits (71), Expect = 0.24
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Frame = -1
Query: 470 QHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDTDLSES--EAISAAHMXXX 297
QH AV A NP+D + + D+ +R ER R E T+LS + EA +AAH
Sbjct: 209 QHIRAV-QAILRENPYDPVLN---DDLKRWTERLR---ESVTNLSNAFEEAATAAHPEQP 261
Query: 296 XXXXXXXXXXSRDE--HRVLRIETKQAPVRSQPEVVLSDVDTTDFLNAERAHVDSTRGDH 123
R E R +R Q T D +N R HV S R D+
Sbjct: 262 PTGDANGEDPERRESPQRATPPPRGTGDLRDQINGRQEARRTRDNVNRSRRHVSSRRHDN 321
Query: 122 TVNGDHSDAHQSTFSH 75
GD S+ + +H
Sbjct: 322 GNRGDRSNEDRDQDNH 337
>04_04_0315 - 24331996-24332853
Length = 285
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 510 DGSGLEGHHPARLPAQRGRVQRALRPEPLRPYH 412
DG G HHP + +Q G+ R P PL P H
Sbjct: 21 DGGG--AHHPRLISSQVGQPARPTSPSPLPPRH 51
>06_03_1345 + 29478768-29479922
Length = 384
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 491 GIIQRGYQHNAAVYSAPYARNPFDHITD--NEIDEYRRDVERKRR 363
G+ + AA + AR PFDH+ E+ E D ER+RR
Sbjct: 38 GVAAASIRLRAARATGGDARQPFDHVPRGVEEVGEMEEDEERRRR 82
>02_04_0288 + 21607289-21608251
Length = 320
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 417 MVEGVPGVGRAVHGRVVLVAALDDALRGRSHQH 515
M G P +GR RV++ AA D LR R+H +
Sbjct: 234 MAPGAPPLGRMACDRVMVCAAEGDFLRWRAHAY 266
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = -3
Query: 609 GTGPPLEGVTWDEASKMVGEDAVNTHTGGPCGAD-GSGLEGHHPARLPAQRGRVQRALRP 433
G PP E ++ + A GG GA+ G G G A A R R + R
Sbjct: 11 GEAPPPEARAAAAVERVAADSAAGALRGGAPGAEAGGGGGGGGGAGAGAARRRARGGARA 70
Query: 432 EPLRP 418
P RP
Sbjct: 71 APARP 75
>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
Length = 178
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 513 ADGSGLEGHHPARLPAQRGRVQR 445
A GSG G +PARL R R+QR
Sbjct: 48 ARGSGYSGAYPARLRVARPRIQR 70
>05_01_0533 + 4594169-4595065,4598375-4598983
Length = 501
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +2
Query: 491 PSRPLPSAPHGPPVWVFTASSPTILLASSQV 583
PS P PS PHG ASSP L S V
Sbjct: 3 PSSPSPSPPHGAAAVKQPASSPDARLTPSSV 33
>07_03_0506 -
18861787-18861917,18862017-18862201,18862542-18862613,
18863163-18863234,18863596-18863667,18864371-18864518,
18864864-18865922,18866663-18866762
Length = 612
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 479 RGYQHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDT 345
R Q AA APYA++ D ++ ++ R E R GN+ T
Sbjct: 562 RRAQKLAAAREAPYAKSRTQFTRDMQMAKHHRPHESSRSGNDEST 606
>07_01_0907 - 7636725-7637681
Length = 318
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = -3
Query: 609 GTGPPLEGVTWDEASKMVGEDAVNTHTGGPCGADGSGLEGHHPARLPAQRGRVQRALRPE 430
G G + + E S + AV+ GG G DG GLE P R A+ P
Sbjct: 140 GGGGGASRLGFPELSSLHAAAAVDYQLGGGGGGDGLGLERQRLPHFPF-LARSNAAVHPP 198
Query: 429 PL 424
PL
Sbjct: 199 PL 200
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 526 PGVGVHGVLADHLAGFVPSHPL 591
PG+G GV HLA F+PSHP+
Sbjct: 777 PGMGPIGV-KKHLAPFLPSHPV 797
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 526 PGVGVHGVLADHLAGFVPSHPL 591
PG+G GV HLA F+PSHP+
Sbjct: 779 PGMGPIGV-KKHLAPFLPSHPV 799
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +1
Query: 529 GVGVHGVLADHLAG-FVPSHP 588
G G HG DHL G FV +HP
Sbjct: 170 GAGTHGFTLDHLTGEFVLTHP 190
>05_01_0012 -
70296-70398,70494-70648,70737-70843,71138-71216,
71343-71423,71556-72581
Length = 516
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 444 RAVHGRVVLVAALDDALRGRSHQHH 518
R +H R ++AAL + + R+H HH
Sbjct: 252 RGLHARKRIMAALREEMAARNHHHH 276
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1
Query: 611 WVPGPPSRG*LGTKPARWSARTP*TPTP 528
W P PP+ G G A SARTP TPTP
Sbjct: 8 WGPPPPA-GEKGAGAASTSARTP-TPTP 33
>06_02_0346 -
14837982-14838122,14838208-14838327,14838411-14838564,
14838793-14838866,14838962-14839095,14839207-14839326,
14843174-14843308,14843842-14843976,14844343-14845003,
14845103-14845264,14845348-14845510,14880834-14881021
Length = 728
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/66 (28%), Positives = 23/66 (34%)
Frame = -1
Query: 221 PVRSQPEVVLSDVDTTDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEGSPSKEA 42
P E L D + L A A+V +H GD S SHS P E
Sbjct: 486 PTAPAVEPALPDFGVPNTLLALTAYVQDETAEHNTQGDSSHDDDDNLSHS----LPPDEL 541
Query: 41 STEDSP 24
T+ P
Sbjct: 542 LTDSQP 547
>03_05_0675 + 26630466-26632070
Length = 534
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -1
Query: 428 PFDHITDNEIDEYRRDVERKRRGNEYDTDLS 336
PF H D+++ E+ ++ R++ GN+ +D++
Sbjct: 415 PFHHDNDDDMVEHEQEQRRRQDGNDGSSDVA 445
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 32 PRWKPPSTESPLYCCERMYSDGRPNGH 112
PRW+PP + CC + R GH
Sbjct: 33 PRWRPPGAGAADSCCLLFRARARRRGH 59
>03_02_0557 +
9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 236 ETKQAPVRSQPEVVLSDVDTTDFLNAERAHVDSTRGDHTVNG-DHSDAHQSTFSHSSKEG 60
ET + PE +SD+ T+ + +E ++T G T +G H+ A +S E
Sbjct: 463 ETSTPILSRSPEKEISDLSTSTSMKSEETPSENTAGLLTTDGIKHNSAGPVALRSTSSEC 522
Query: 59 SP 54
P
Sbjct: 523 DP 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,277
Number of Sequences: 37544
Number of extensions: 342477
Number of successful extensions: 1343
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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