Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1716
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.78 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 464 NAAVYSAPYARNPFDHITDNEIDEYRRDVE 375
           N  + + PY  N FD  +D  + +YR   E
Sbjct: 153 NTTIQACPYTLNIFDLTSDKLLRQYRLRAE 182


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 563 LLASSQVTPSRGGPVPN 613
           LL SS   PSRG  VP+
Sbjct: 11  LLLSSCTRPSRGNAVPS 27


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 521  GPPVWVFTASSPTILLASSQVTP 589
            G P++VF  S+P   + S    P
Sbjct: 945  GEPLYVFVRSAPNFYMPSEPKAP 967


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 563 LLASSQVTPSRGGPVPN 613
           LL SS   PSRG  VP+
Sbjct: 11  LLLSSCTRPSRGNAVPS 27


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 603 GPPLEGVTWDEASKMVGED 547
           G P+E + W+ A++ + +D
Sbjct: 544 GYPIEEIKWERANRELPDD 562


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 603 GPPLEGVTWDEASKMVGED 547
           G P+E + W+ A++ + +D
Sbjct: 544 GYPIEEIKWERANRELPDD 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,953
Number of Sequences: 438
Number of extensions: 2984
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)