Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1715
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 477 RFLKRPVIYLNIKFYFF*QFVREEA 551
           +++K P IY     YFF   V EEA
Sbjct: 155 KYMKFPAIYEIYPNYFFDSSVIEEA 179


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 477 RFLKRPVIYLNIKFYFF*QFVREEA 551
           +++K P IY     YFF   V EEA
Sbjct: 155 KYMKFPAIYEIYPNYFFDSSVIEEA 179


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 144 NRLQKMKLSIRPPLFIYVCSTRMFDPIL 61
           N   K+   I+  LF++ C+    +PI+
Sbjct: 288 NSAYKIDQRIQKGLFLFACTNSCMNPIV 315


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 230 RDFIYVESENIFE*YNVKELFKVSK 156
           R+F  ++ E IFE + + +L +VS+
Sbjct: 261 RNFKKMQEEKIFEPHRIPQLQEVSE 285


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 326 FNRFHYALYKD*LLPATSSAWNSYL 252
           +N+F+  +YKD L+  T ++  S L
Sbjct: 304 YNKFNNNVYKDALIVCTVNSCTSML 328


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 326 FNRFHYALYKD*LLPATSSAWNSYL 252
           +N+F+  +YKD L+  T ++  S L
Sbjct: 357 YNKFNNNVYKDALIVCTVNSCTSML 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,689
Number of Sequences: 438
Number of extensions: 3445
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)