Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1712
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 29 0.16
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 2.6
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c... 25 2.6
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 2.6
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 3.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 3.4
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 25 3.4
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 24 5.9
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 23 7.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 23 7.9
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 29.1 bits (62), Expect = 0.16
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 119 LTWWWRFTRDLFRRLKVAQRAMERAMLGI 205
L+ WWR R L RRLK + E+A + I
Sbjct: 24 LSVWWRHVRMLLRRLKQSLDGNEKAKIAI 52
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 226 SDSIT*RNAEHSPLHSSLRDFEPSKKIPSEAPPPSQKVKISKSAHS 89
+DS + P + +L+ F P + + S PPS + S S +S
Sbjct: 285 TDSFLLGQSLSDPFNHTLQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 69 TISSKSQCHYTTVIIDLHTCR 7
T SS S HY +I HTCR
Sbjct: 46 TTSSNSLTHYQWYLIYKHTCR 66
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 2.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 181 SSLRDFEPSKKIPSEAPPPSQKVKISKSAHSRFWLDNDDK 62
S +R F + + ++AP KVK SK S+ + ++ K
Sbjct: 494 SKIRSFYETATVKAKAPTKKSKVKPSKQEESKVVVPSNAK 533
Score = 24.6 bits (51), Expect = 3.4
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = -2
Query: 151 KIPSEAPPPSQKVKISKSAHSRFWLDNDDKLEESMSLYNSN 29
++ AP P++ ++ + H + DND + SL N
Sbjct: 619 ELDDPAPQPAKHSRVDRYEHPKVLEDNDSTISSLESLKREN 659
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 195 IALSIARCATLSLLKRSLVKRHHQVKKLKSQ 103
I+L R A S+LK + ++H+++K+K Q
Sbjct: 14 ISLGWPRLAKTSILKFVPIAQNHRIRKMKVQ 44
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 160 PSKKIPSEA-PPPSQKVKISKSAHSRFWLD 74
PS P+E+ P PS + + FWLD
Sbjct: 421 PSTPSPAESLPQPSNPTSVYAKSLKEFWLD 450
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 3.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 155 RRLKVAQRAMERAMLGISLRDRIRNEEIRTRTNVADIARIISE 283
RR++ R +E + + + EEIRT V R + E
Sbjct: 43 RRIEARNRILESEGRALENKTHLNEEEIRTNERVKRFQRRVDE 85
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 23.8 bits (49), Expect = 5.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 149 LFRRLKVAQRAMERAMLGISLRDRIRNEEIRTRTNVA 259
LFRRLK R ML LRD + R+ ++VA
Sbjct: 225 LFRRLKDIGNPEIRMMLDSGLRDWRKQRSGRSSSHVA 261
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 23.4 bits (48), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 205 NAEHSPLHSSLRDFEPSKKIPSEAPPPS--QKVKISKSAHSR 86
N+ S + + PS++IPS+ P P V++ +S SR
Sbjct: 57 NSNSSGSDNDSKVSSPSREIPSDPPLPRAVPTVRLGRSTSSR 98
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 163 EPSKKIPSEAPPPSQKVKIS 104
EP K PS+ P ++KV +S
Sbjct: 728 EPQDKPPSQTEPDNKKVDVS 747
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,143,094
Number of Sequences: 5004
Number of extensions: 19709
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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