Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1712
         (308 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY211916-1|AAO65169.1|  219|Homo sapiens sarcoma antigen NY-SAR-...    30   1.6  
AY354204-1|AAQ63889.2|  972|Homo sapiens retinoic acid induced 1...    29   2.8  
BC052988-1|AAH52988.1|  980|Homo sapiens retinoic acid induced 1...    29   3.7  
AY317139-1|AAP84319.1|  983|Homo sapiens RAI14 isoform protein.        29   3.7  
AF155135-1|AAF44722.1|  980|Homo sapiens novel retinal pigment e...    29   3.7  
AB037755-1|BAA92572.1|  989|Homo sapiens KIAA1334 protein protein.     29   3.7  
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated...    28   4.8  
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr...    28   4.8  
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ...    28   4.8  
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc...    28   4.8  
AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein.     28   4.8  
AF090920-1|AAF24037.1|   72|Homo sapiens PRO0352 protein.              27   8.5  

>AY211916-1|AAO65169.1|  219|Homo sapiens sarcoma antigen NY-SAR-29
           protein.
          Length = 219

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 208 RNAEHSPLHSSLRDFEPSKKIPSEAPPPSQKVKISKS 98
           R  EH        DF+P KK+  E PPP + V+  ++
Sbjct: 140 REREHCDTEGEADDFDPGKKVEVE-PPPDRPVRACRT 175


>AY354204-1|AAQ63889.2|  972|Homo sapiens retinoic acid induced 14
           isoform protein.
          Length = 972

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 184 HSSLRDFEPSKKIPSEAPPPSQKVKISKSAHS--RFWLDNDDKLEESMSL 41
           HS+  D  PS   P E  PP  K   S   HS  +   DND ++++   +
Sbjct: 380 HSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQPQEI 429


>BC052988-1|AAH52988.1|  980|Homo sapiens retinoic acid induced 14
           protein.
          Length = 980

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 184 HSSLRDFEPSKKIPSEAPPPSQKVKISKSAHS--RFWLDNDDKLEE 53
           HS+  D  PS   P E  PP  K   S   HS  +   DND ++++
Sbjct: 388 HSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 433


>AY317139-1|AAP84319.1|  983|Homo sapiens RAI14 isoform protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 184 HSSLRDFEPSKKIPSEAPPPSQKVKISKSAHS--RFWLDNDDKLEE 53
           HS+  D  PS   P E  PP  K   S   HS  +   DND ++++
Sbjct: 391 HSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 436


>AF155135-1|AAF44722.1|  980|Homo sapiens novel retinal pigment
           epithelial cell protein protein.
          Length = 980

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 184 HSSLRDFEPSKKIPSEAPPPSQKVKISKSAHS--RFWLDNDDKLEE 53
           HS+  D  PS   P E  PP  K   S   HS  +   DND ++++
Sbjct: 388 HSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 433


>AB037755-1|BAA92572.1|  989|Homo sapiens KIAA1334 protein protein.
          Length = 989

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 184 HSSLRDFEPSKKIPSEAPPPSQKVKISKSAHS--RFWLDNDDKLEE 53
           HS+  D  PS   P E  PP  K   S   HS  +   DND ++++
Sbjct: 397 HSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 442


>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
            repressor protein (SHARP) protein.
          Length = 3664

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 250  RSCTDLLISDSIT*RNAEHSPLHSSLRDFEPSK-KIPSEAPPPSQKVKISKSAHSRF 83
            +SCT    SD     + E+S    S+ +  P+K  +P + PPP Q   + +   +RF
Sbjct: 2396 QSCT----SDLSKIPSTENSSQEISVEERTPTKASVPPDLPPPPQPAPVDEEPQARF 2448


>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
            protein.
          Length = 3261

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 250  RSCTDLLISDSIT*RNAEHSPLHSSLRDFEPSK-KIPSEAPPPSQKVKISKSAHSRF 83
            +SCT    SD     + E+S    S+ +  P+K  +P + PPP Q   + +   +RF
Sbjct: 1993 QSCT----SDLSKIPSTENSSQEISVEERTPTKASVPPDLPPPPQPAPVDEEPQARF 2045


>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
            repressor protein (SHARP) protein.
          Length = 3664

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 250  RSCTDLLISDSIT*RNAEHSPLHSSLRDFEPSK-KIPSEAPPPSQKVKISKSAHSRF 83
            +SCT    SD     + E+S    S+ +  P+K  +P + PPP Q   + +   +RF
Sbjct: 2396 QSCT----SDLSKIPSTENSSQEISVEERTPTKASVPPDLPPPPQPAPVDEEPQARF 2448


>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
            transcription cofactor protein.
          Length = 3664

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 250  RSCTDLLISDSIT*RNAEHSPLHSSLRDFEPSK-KIPSEAPPPSQKVKISKSAHSRF 83
            +SCT    SD     + E+S    S+ +  P+K  +P + PPP Q   + +   +RF
Sbjct: 2396 QSCT----SDLSKIPSTENSSQEISVEERTPTKASVPPDLPPPPQPAPVDEEPQARF 2448


>AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein.
          Length = 1663

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 250 RSCTDLLISDSIT*RNAEHSPLHSSLRDFEPSK-KIPSEAPPPSQKVKISKSAHSRF 83
           +SCT    SD     + E+S    S+ +  P+K  +P + PPP Q   + +   +RF
Sbjct: 395 QSCT----SDLSKIPSTENSSQEISVEERTPTKASVPPDLPPPPQPAPVDEEPQARF 447


>AF090920-1|AAF24037.1|   72|Homo sapiens PRO0352 protein.
          Length = 72

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 196 HSPLHSSLRDFEPSKKIPSEAPPPSQKVKISKS 98
           H+P+H +L+D    K I S   PP +K+  S S
Sbjct: 35  HTPVHITLKDPTLLKPICSSQAPPPKKLNSSPS 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,405,600
Number of Sequences: 237096
Number of extensions: 773378
Number of successful extensions: 2354
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2354
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)