Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1712
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   0.84 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   5.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   7.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 195 IALSIARCATLSLLKRSLVKRHHQVKKLKSQKVHIADFG*TTTISSKSQCHYTT 34
           IA  +   A ++ + R L  R+  V      K  IADFG +  I S ++  YTT
Sbjct: 744 IASGMQYLAEMNYVHRDLAARNVLVNAALVCK--IADFGLSREIESATEGAYTT 795


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 180 LWRGLCSAFLY 212
           +W G+C  F+Y
Sbjct: 365 VWDGVCMCFIY 375


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 180 LWRGLCSAFLY 212
           +W G+C  F+Y
Sbjct: 334 VWDGVCMCFIY 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 180 LWRGLCSAFLY 212
           +W G+C  F+Y
Sbjct: 385 VWDGVCMCFIY 395


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +3

Query: 180 LWRGLCSAFLY 212
           +W G+C  F+Y
Sbjct: 334 VWDGVCMCFIY 344


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 RFTRDLFRRLKVAQRAMERAMLGISLRDRIR 226
           R +RDL+  ++     +ER  + + + + IR
Sbjct: 681 RLSRDLYCGIRAGLSWLERIQIALDVLEGIR 711


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 RFTRDLFRRLKVAQRAMERAMLGISLRDRIR 226
           R +RDL+  ++     +ER  + + + + IR
Sbjct: 719 RLSRDLYCGIRAGLSWLERIQIALDVLEGIR 749


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 209 LRDRIRNEEIRTRTNVADIARIISELKWQWAG 304
           L+D ++    R    ++D    I  ++W+ AG
Sbjct: 180 LKDPVKEFWERRTLQISDGIENIGSIRWELAG 211


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 209 LRDRIRNEEIRTRTNVADIARIISELKWQWAG 304
           L+D ++    R    ++D    I  ++W+ AG
Sbjct: 233 LKDPVKEFWERRTLQISDGIENIGSIRWELAG 264


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 149 LFRRLKVAQRAMERAMLGISLRDRIRN 229
           L   LK+A+   E   + I L D IRN
Sbjct: 312 LIAALKIAKDIPEEKRMVIILPDGIRN 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,062
Number of Sequences: 438
Number of extensions: 1384
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)