Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1711
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    33   0.011
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   0.31 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   2.9  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   5.0  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   5.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   6.7  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    24   8.8  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 33.5 bits (73), Expect = 0.011
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 59  LLANIVENLQLKIIDVHLRYEDTVT-CGRAFACGLTAQSL 175
           L+A + +N+Q+ I  +HLR+ED ++   + ++ GLT  SL
Sbjct: 147 LIAKLTDNIQIYIERIHLRFEDNLSDLEKPYSLGLTLYSL 186


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +2

Query: 44  SYGTGLLANIVENLQLKIIDVHLRYE 121
           ++   L+  +++N+Q+ I D+H+R+E
Sbjct: 135 TFTESLITRMIDNIQINIRDIHIRFE 160


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +2

Query: 152 CGLTAQSLAARELRLPAGRNGSSCSPTPRVARTSCWSCSNWRSTGIPSVRRPLC 313
           C  T +SL      L +   GSSC      + +   SC +       S ++P C
Sbjct: 202 CACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSC 255


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 207 LPAGSRSSRAASDCAVSPHAK 145
           LP G +++R  ++C ++ HA+
Sbjct: 494 LPLGRKTARKCTECGITAHAQ 514


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 121 FVSKVYIDYLQL*IFNNICKKSC 53
           F   VY DYL     N++ KKSC
Sbjct: 157 FYVPVYRDYLMALNINSVSKKSC 179


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 23/71 (32%), Positives = 29/71 (40%)
 Frame = +2

Query: 74   VENLQLKIIDVHLRYEDTVTCGRAFACGLTAQSLAARELRLPAGRNGSSCSPTPRVARTS 253
            +ENL LK    HL+Y+      R       A+  +A  LR   G     C  T     TS
Sbjct: 1635 IENLMLKPTGTHLKYQFEEGSARLSCKVFFAEQFSA--LRRACG-----CEET---FVTS 1684

Query: 254  CWSCSNWRSTG 286
               CS W S+G
Sbjct: 1685 LARCSLWESSG 1695


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 229 DPEGRSHKLLELQQLALYWDPISTPSA 309
           DP     KL ELQ+L L  +PI T  A
Sbjct: 259 DPWSPKTKLPELQELVLVGNPIVTTFA 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,478
Number of Sequences: 5004
Number of extensions: 24253
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)