Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1711
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 42 1e-04
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 40 5e-04
08_01_0693 + 6131714-6132531,6133038-6135027 32 0.17
08_01_0692 + 6121443-6122266,6122812-6124798 31 0.38
08_01_0942 - 9336726-9337196 29 1.2
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 2.0
02_05_1299 - 35553666-35554481,35554594-35554623 27 3.6
12_02_0249 + 16427590-16428975,16428990-16429082 27 4.7
02_05_1288 + 35466544-35466579,35466691-35467590,35467695-35468231 27 6.2
02_05_0363 - 28297295-28298167 27 6.2
12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097 26 8.2
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 26 8.2
05_05_0265 - 23680609-23681313 26 8.2
05_02_0049 - 6083364-6084111,6084140-6084246 26 8.2
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 26 8.2
02_05_1039 + 33707196-33708815 26 8.2
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 26 8.2
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 SSWLSYGTGLLANIVENLQLKIIDVHLRYEDTVT-CGRAFACGLTAQSLAA 181
+SWL L++ I+ NL++ I +VH+RYED+V+ G FA G T LAA
Sbjct: 213 NSWLY---NLISTIIGNLKVTISNVHIRYEDSVSNSGHPFASGFTLSRLAA 260
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 40.3 bits (90), Expect = 5e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 SSWLSYGTGLLANIVENLQLKIIDVHLRYEDTVT-CGRAFACGLTAQSLAA 181
SSWL ++ ++ N++L I ++H+RYEDT + G FA GL L+A
Sbjct: 228 SSWLG---SFISTVIGNIKLSISNIHIRYEDTESNPGHPFAAGLALSKLSA 275
>08_01_0693 + 6131714-6132531,6133038-6135027
Length = 935
Score = 31.9 bits (69), Expect = 0.17
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 197 PAGRNGSSCSPTPRVARTSCWSCSNWR 277
P NGS T RV +CW+CSN R
Sbjct: 295 PENSNGSRVIVTTRVEDVACWACSNHR 321
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 30.7 bits (66), Expect = 0.38
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 197 PAGRNGSSCSPTPRVARTSCWSCSN 271
P NGS T RV +CW+CSN
Sbjct: 297 PENANGSRVIVTTRVEDVACWACSN 321
>08_01_0942 - 9336726-9337196
Length = 156
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 122 DTVTCGRAFACGLTAQSLAARELRLPAGRNGSSCSPTPRVARTSCWSCSNWRSTGIPSVR 301
D A GL + A E LP G++ + C+P P V + S+ S P +
Sbjct: 75 DGALAAMALNKGLIVEVSLADEPNLPPGQSSNECTPPPTVVEGDGEASSS--SGANPPLS 132
Query: 302 RPLCLPNLV 328
P P LV
Sbjct: 133 NPRSSPTLV 141
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 35 SWLSYGTGLLANIVENLQLKIIDVHLRYED 124
S LSY +LA I++N+Q+ I +VH+ Y D
Sbjct: 121 SLLSY---ILAKILDNIQVSIRNVHITYAD 147
>02_05_1299 - 35553666-35554481,35554594-35554623
Length = 281
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 107 HLRYEDTVTCGRAFACGLTAQSLAARELRLPAGRNGSSCSPT 232
+LRY D +T G+A ++ +L E + + G C T
Sbjct: 117 YLRYYDCLTIGKAVQHAMSTYNLETLEFTILTEKQGGCCEET 158
>12_02_0249 + 16427590-16428975,16428990-16429082
Length = 492
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +2
Query: 98 IDVHLRYEDTVTCGRAFACGLTAQSLAARELRLPAGRNGSSCSPTPRVARTSCWSCSNWR 277
+DV +R D T G A T L ELR P+ ++ +P + S W + R
Sbjct: 295 VDVSIRRRDGETGGTTAAA--TIMPLPTTELRAPSCTGEATVTPGQLLLAPSSWRGGDRR 352
Query: 278 STGI 289
S+ +
Sbjct: 353 SSSL 356
>02_05_1288 + 35466544-35466579,35466691-35467590,35467695-35468231
Length = 490
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 107 HLRYEDTVTCGRAFACGLTAQSLAARELRL 196
+L+Y D +T G+A A +T L + E R+
Sbjct: 116 YLKYYDCLTIGKAVARAMTTHKLDSAEFRI 145
>02_05_0363 - 28297295-28298167
Length = 290
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 155 GLTAQSLAARELRLPAGRNGSSCSPTPRVA 244
G+ A L R L L A +NG+S SP P A
Sbjct: 15 GVCATCLNDRLLALAAAQNGASSSPPPPAA 44
>12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097
Length = 371
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 55 RTSCKYC*KFTVEDNRCTPSIRRHSHLRTRFRMRADCAVAG 177
R SC Y KF++E+ + P I+ S L F + +AG
Sbjct: 288 RDSCLYAYKFSLEEGKMAPPIKLAS-LYDDFSAHGNAFIAG 327
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 100 RCTPSIRRHSHLRTRFRMRADCAVAGGSRAATASWK 207
R P R H R R R C GGS A SW+
Sbjct: 80 RPPPPPPRCCHRRRRVAARCCCCGGGGSVAGHVSWR 115
>05_05_0265 - 23680609-23681313
Length = 234
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 249 VRATLGVGEQLEPFLPAGSRSSRAASDCAVSPHAKARP-QVTVSSYRRCTSIIFNCKFST 73
V L V ++P P ++ AA D + A A V ++ +R+ S++FNC+ T
Sbjct: 5 VHPNLAVPSLIQP--PMAPPAAMAAGDSVMKTKAAAAGGDVVLTVWRK--SLLFNCRGFT 60
Query: 72 IFARS 58
+F S
Sbjct: 61 VFDAS 65
>05_02_0049 - 6083364-6084111,6084140-6084246
Length = 284
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 155 GLTAQSLAARELRLPAGRNGSSCSPTPRVARTS----CWSCSNWRSTGIPSVRRPLC 313
G TA S A + ++ R+G + P + + CWS S+WRS+ R C
Sbjct: 24 GATA-SFPAPKSQMRRRRSGGAGVPADAASAAASAGRCWSSSSWRSSPPSPAARSTC 79
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 203 GRNGSSCSPTPRVARTSC 256
GR G SPTPR A +C
Sbjct: 159 GRTGGCSSPTPRAASLAC 176
>02_05_1039 + 33707196-33708815
Length = 539
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 103 CTPSIRRHSHLRTRFRMRADCAVAGGSRAATASWK 207
C S++R++ L+ F A AVA AAT K
Sbjct: 470 CRDSVKRYASLKNAFAALAAAAVAAAILAATRQLK 504
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 197 PAGRNGSSCSPTPRVARTSCWSCSNWRSTGIPSVRRPL 310
PAG +G +CSP R C C S + + R L
Sbjct: 224 PAGADGHACSPAWTPRRPRCRRCCCAASDDVDAALRAL 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,200,129
Number of Sequences: 37544
Number of extensions: 202311
Number of successful extensions: 701
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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