Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1711
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical p... 43 6e-05
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 36 0.007
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 36 0.007
Z71179-2|CAA94889.2| 170|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z70755-8|CAA94786.2| 170|Caenorhabditis elegans Hypothetical pr... 27 3.2
EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein. 27 3.2
AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical... 27 3.2
AF042392-1|AAC08943.1| 170|Caenorhabditis elegans FMRFamide-lik... 27 3.2
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 27 3.2
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical p... 27 4.3
AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein. 27 4.3
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 27 4.3
Z19154-2|CAA79554.1| 504|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z75539-2|CAA99844.2| 555|Caenorhabditis elegans Hypothetical pr... 26 7.5
U32326-1|AAC46965.1| 555|Caenorhabditis elegans G protein signa... 26 7.5
AF408755-1|AAO27834.1| 360|Caenorhabditis elegans unknown prote... 26 7.5
AF047651-4|AAK67208.2| 516|Caenorhabditis elegans Hypothetical ... 26 7.5
AF047651-3|AAZ82848.1| 515|Caenorhabditis elegans Hypothetical ... 26 7.5
>U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical
protein C25H3.11 protein.
Length = 947
Score = 43.2 bits (97), Expect = 6e-05
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +2
Query: 35 SWLSYGTGLLANIVENLQLKIIDVHLRYEDTVTC-GRAFACGLTAQSL 175
SW +G L++ ++ N+QL + +VH+RYED T G+ F CG+ Q +
Sbjct: 140 SW--WGASLISTVLNNIQLILNNVHIRYEDDTTIPGQTFNCGIRIQKM 185
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical
protein T08G11.1b protein.
Length = 3185
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 LLANIVENLQLKIIDVHLRYEDTVT-CGRAFACGLTAQSL 175
++ I++NLQ+ + ++H+R+ED T R FA G+T + L
Sbjct: 140 MITQIIKNLQISVSNIHVRFEDRYTNRHRPFAMGITLEKL 179
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical
protein T08G11.1a protein.
Length = 3212
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 LLANIVENLQLKIIDVHLRYEDTVT-CGRAFACGLTAQSL 175
++ I++NLQ+ + ++H+R+ED T R FA G+T + L
Sbjct: 140 MITQIIKNLQISVSNIHVRFEDRYTNRHRPFAMGITLEKL 179
>Z71179-2|CAA94889.2| 170|Caenorhabditis elegans Hypothetical
protein F07D3.2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 351 MRSVSSYYTKFGKHSGRRTDGIPVER 274
M S Y +FGK SG + D +P+E+
Sbjct: 80 MEKRKSAYMRFGKRSGPQEDDMPMEK 105
>Z70755-8|CAA94786.2| 170|Caenorhabditis elegans Hypothetical
protein F07D3.2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 351 MRSVSSYYTKFGKHSGRRTDGIPVER 274
M S Y +FGK SG + D +P+E+
Sbjct: 80 MEKRKSAYMRFGKRSGPQEDDMPMEK 105
>EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein.
Length = 801
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 128 LCLRIEGVHRLSSTVNFQQYLQEVL 54
LC RI G+HRL T++F YL L
Sbjct: 366 LCARIIGIHRL-HTLSFYSYLHRFL 389
>AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical
protein Y39B6A.14 protein.
Length = 801
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 128 LCLRIEGVHRLSSTVNFQQYLQEVL 54
LC RI G+HRL T++F YL L
Sbjct: 366 LCARIIGIHRL-HTLSFYSYLHRFL 389
>AF042392-1|AAC08943.1| 170|Caenorhabditis elegans FMRFamide-like
peptide 6 protein.
Length = 170
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 351 MRSVSSYYTKFGKHSGRRTDGIPVER 274
M S Y +FGK SG + D +P+E+
Sbjct: 80 MEKRKSAYMRFGKRSGPQEDDMPMEK 105
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 225 EQLEPFLPAGSRSSRAASDCAVSPHAKARPQVTVSSYRRCTSIIFNCKFSTIFARSPVP 49
EQ +PA + ++ A DC + A A P T S YR + + + + A +P P
Sbjct: 566 EQAPVAVPAPAPAAAPAPDCGSAAPAPAAPAATDSGYRSKRNAYGDEQVTPAPAAAPAP 624
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 225 EQLEPFLPAGSRSSRAASDCAVSPHAKARPQVTVSSYR 112
EQ +PA + ++ A DC + A A P T S YR
Sbjct: 46 EQAPVAVPAPAPAAAPAPDCGSAAPAPAAPAATDSGYR 83
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 225 EQLEPFLPAGSRSSRAASDCAVSPHAKARPQVTVSSYR 112
EQ +PA + ++ A DC + A A P T S YR
Sbjct: 630 EQAPVAVPAPAPAAAPAPDCGSAAPAPAAPAATDSGYR 667
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 154 RADCAVAGGSRAATASWKKWF*LL 225
R C +GG RA SWK ++ +L
Sbjct: 3683 RKQCQQSGGKRATIRSWKNYYGIL 3706
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 154 RADCAVAGGSRAATASWKKWF*LL 225
R C +GG RA SWK ++ +L
Sbjct: 3683 RKQCQQSGGKRATIRSWKNYYGIL 3706
>Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 147 KARPQVTVSSYRRCTSIIFNCKFSTIFARSPV 52
K Q+T TS I NC FS + SP+
Sbjct: 800 KINVQITADQLSASTSHILNCLFSVVLDPSPI 831
>Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 147 KARPQVTVSSYRRCTSIIFNCKFSTIFARSPV 52
K Q+T TS I NC FS + SP+
Sbjct: 800 KINVQITADQLSASTSHILNCLFSVVLDPSPI 831
>AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein.
Length = 1247
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 147 KARPQVTVSSYRRCTSIIFNCKFSTIFARSPV 52
K Q+T TS I NC FS + SP+
Sbjct: 800 KINVQITADQLSASTSHILNCLFSVVLDPSPI 831
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 154 RADCAVAGGSRAATASWKKWF*LL 225
R C +GG RA SWK ++ +L
Sbjct: 3683 RKQCQQSGGKRATIRSWKNYYGIL 3706
>Z19154-2|CAA79554.1| 504|Caenorhabditis elegans Hypothetical
protein C40H1.3 protein.
Length = 504
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 58 TSCKYC*KFTVEDNRCTPSIRRHSHLRTRFRMRADCAVA 174
TSCKYC K T+ I R L+ DC +A
Sbjct: 320 TSCKYCMKLTMVSQLTDHLIYRCEFLQDTMEACNDCGLA 358
>Z75539-2|CAA99844.2| 555|Caenorhabditis elegans Hypothetical
protein F28C1.2 protein.
Length = 555
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 152 CGLTAQSLAARELRLPAGRNGSSCSP 229
C +QS+AA LP+ NGS+ SP
Sbjct: 242 CTQYSQSVAAAHASLPSTSNGSATSP 267
>U32326-1|AAC46965.1| 555|Caenorhabditis elegans G protein
signaling regulator protein.
Length = 555
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 152 CGLTAQSLAARELRLPAGRNGSSCSP 229
C +QS+AA LP+ NGS+ SP
Sbjct: 242 CTQYSQSVAAAHASLPSTSNGSATSP 267
>AF408755-1|AAO27834.1| 360|Caenorhabditis elegans unknown protein
protein.
Length = 360
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 219 LEPFLPAGSRSSRAASDCAVSPHAKARPQVTVSSYRR 109
LEP G+ S + PH + Q+ SSY R
Sbjct: 15 LEPGQSLGNSESMKFDYVVIQPHVRPHQQIPTSSYSR 51
>AF047651-4|AAK67208.2| 516|Caenorhabditis elegans Hypothetical
protein C05D2.6a protein.
Length = 516
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 219 LEPFLPAGSRSSRAASDCAVSPHAKARPQVTVSSYRR 109
LEP G+ S + PH + Q+ SSY R
Sbjct: 171 LEPGQSLGNSESMKFDYVVIQPHVRPHQQIPTSSYSR 207
>AF047651-3|AAZ82848.1| 515|Caenorhabditis elegans Hypothetical
protein C05D2.6b protein.
Length = 515
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 219 LEPFLPAGSRSSRAASDCAVSPHAKARPQVTVSSYRR 109
LEP G+ S + PH + Q+ SSY R
Sbjct: 170 LEPGQSLGNSESMKFDYVVIQPHVRPHQQIPTSSYSR 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,022,184
Number of Sequences: 27780
Number of extensions: 149606
Number of successful extensions: 405
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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