Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1711
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   3.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   8.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 148 RMRADCAVAGGSRAATASWKK 210
           R R  C VA G    T SW K
Sbjct: 627 RTRTVCGVAAGDPPLTISWLK 647


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 61  SCKYC*KFTVEDNRCTPSIRRHS 129
           SCKYC K  V        IR H+
Sbjct: 18  SCKYCEKVYVSLGALKMHIRTHT 40


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 18 TPPSTPRGSAM 50
          TPPS P GSA+
Sbjct: 53 TPPSVPVGSAV 63


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 199 SWKKWF*LLPDPEGRSHKLLELQQLALYWDPIS 297
           +WK     LP+     ++LLE+  L   W P S
Sbjct: 91  TWKDNRLRLPENMTSEYRLLEVDWLKNMWRPDS 123


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 197 PAGRNGSSCSPTPRVARTSCWSCSN 271
           P     SS SP PR+A     S S+
Sbjct: 503 PVVETNSSPSPNPRIASAPSSSTSS 527


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 219 LEPFLPAGSRSSRAASDCAVSPHA 148
           L+PF+PA ++S  + +D   S  A
Sbjct: 450 LKPFIPAVTKSLASLTDAENSRRA 473


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 250 KLLELQQLALYWDPISTPSA 309
           K + +QQ   YW  +  PSA
Sbjct: 329 KTISVQQWNSYWGILGFPSA 348


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 250 KLLELQQLALYWDPISTPSA 309
           K + +QQ   YW  +  PSA
Sbjct: 329 KTISVQQWNSYWGILGFPSA 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,719
Number of Sequences: 438
Number of extensions: 1859
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)